| HyPhy: hypothesis testing using phylogenies SLK Pond, SV Muse Statistical methods in molecular evolution, 125-181, 2005 | 2859 | 2005 |
| Not so different after all: a comparison of methods for detecting amino acid sites under selection SL Kosakovsky Pond, SDW Frost Molecular biology and evolution 22 (5), 1208-1222, 2005 | 1875 | 2005 |
| Datamonkey: rapid detection of selective pressure on individual sites of codon alignments SLK Pond, SDW Frost Bioinformatics 21 (10), 2531-2533, 2005 | 1376 | 2005 |
| Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology W Delport, AFY Poon, SDW Frost, SL Kosakovsky Pond Bioinformatics 26 (19), 2455-2457, 2010 | 1196 | 2010 |
| Detecting individual sites subject to episodic diversifying selection B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, ... PLoS genetics 8 (7), e1002764, 2012 | 1143 | 2012 |
| Automated phylogenetic detection of recombination using a genetic algorithm SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Molecular biology and evolution 23 (10), 1891-1901, 2006 | 872 | 2006 |
| Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... MedRxiv, 2020 | 850 | 2020 |
| FUBAR: a fast, unconstrained bayesian approximation for inferring selection B Murrell, S Moola, A Mabona, T Weighill, D Sheward, ... Molecular biology and evolution 30 (5), 1196-1205, 2013 | 821 | 2013 |
| Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021 | 802 | 2021 |
| GARD: a genetic algorithm for recombination detection SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Bioinformatics 22 (24), 3096-3098, 2006 | 722 | 2006 |
| Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021 | 719 | 2021 |
| Persistent HIV-1 replication maintains the tissue reservoir during therapy R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim, J Archer, ... Nature 530 (7588), 51-56, 2016 | 569 | 2016 |
| Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage RA Farrer, LA Weinert, J Bielby, TWJ Garner, F Balloux, F Clare, J Bosch, ... Proceedings of the National Academy of Sciences 108 (46), 18732-18736, 2011 | 455 | 2011 |
| A random effects branch-site model for detecting episodic diversifying selection SL Kosakovsky Pond, B Murrell, M Fourment, SDW Frost, W Delport, ... Molecular biology and evolution 28 (11), 3033-3043, 2011 | 425 | 2011 |
| Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ... Molecular biology and evolution 32 (5), 1342-1353, 2015 | 390 | 2015 |
| Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond Molecular biology and evolution 35 (3), 773-777, 2018 | 378 | 2018 |
| Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection SDW Frost, T Wrin, DM Smith, SLK Pond, Y Liu, E Paxinos, C Chappey, ... Proceedings of the National Academy of Sciences 102 (51), 18514-18519, 2005 | 371 | 2005 |
| RELAX: detecting relaxed selection in a phylogenetic framework JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler Molecular biology and evolution 32 (3), 820-832, 2015 | 341 | 2015 |
| Gene-wide identification of episodic selection B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ... Molecular biology and evolution 32 (5), 1365-1371, 2015 | 302 | 2015 |
| 28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007 | 301 | 2007 |
Simon DW FrostMicrosoft ResearchVerified email at microsoft.com
