Simon Kasif

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
T. M. MuraliDepartment of Computer Science, Virginia TechVerified email at cs.vt.edu
Dr. John RachlinNortheastern UniversityVerified email at northeastern.edu
Owen WhiteDirector of Bioinformatics, Institute for Genome Sciences, Professor, Department of Epidemiology and Preventative, University ofVerified email at som.umaryland.edu
Bradley BernsteinProfessor of Pathology, Harvard UniversityVerified email at broadinstitute.org
Sreerama MurthyCEO & Chief Data Scientist, QuadratyxVerified email at quadratyx.com
Martin SteffenBoston UniversityVerified email at bu.edu
Manway LiuVerily (formerly Google[x] Life Sciences)Verified email at google.com
Geoffrey M CooperProfessor Emeritus of Biology, Boston UniversityVerified email at bu.edu
Isaac KohaneHarvard Medical School, Children's Hospital, Brigham and Women's HospitalVerified email at hms.harvard.edu
Richard BeigelTemple UniversityVerified email at temple.edu
Mary Elizabeth PattiInvestigator, Joslin Diabetes Center; Associate Professor, Harvard Medical SchoolVerified email at joslin.harvard.edu
Peter J ParkHarvard Medical SchoolVerified email at harvard.edu
Mario L. SuvaAssociate Professor, Massachusetts General Hospital, Broad Institute, Harvard Medical SchoolVerified email at mgh.harvard.edu
Lina FallerGinkgo BioworksVerified email at bu.edu
Daniel SegrèProfessor at Boston University, Biology, Biomedical Engineering, Physics, BioinformaticsVerified email at bu.edu
Niels KlitgordViome IncVerified email at viome.com
Jeremiah FaithIcahn School of Medicine at Mount SinaiVerified email at mssm.edu
James J CollinsMIT; Wyss Institute, Harvard; Broad Institute of MIT & HarvardVerified email at mit.edu
Boris HayeteSenior Vice President, Computational Discovery, Empress TherapeuticsVerified email at borisland.com

Simon Kasif

Professor of Biomedical Engineering, Computer Science and Bioinformatics, Boston University

Verified email at bu.edu - Homepage

Systems Biology Computational Biology Diabetes Machine Learning Artificial Intelligence


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Initial sequencing and analysis of the human genome ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ... Macmillan Publishers Ltd., 2001	28280	2001
Improved microbial gene identification with GLIMMER AL Delcher, D Harmon, S Kasif, O White, SL Salzberg Nucleic acids research 27 (23), 4636-4641, 1999	2768	1999
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles JJ Faith, B Hayete, JT Thaden, I Mogno, J Wierzbowski, G Cottarel, ... PLoS biology 5 (1), e8, 2007	1719	2007
Microbial gene identification using interpolated Markov models SL Salzberg, AL Delcher, S Kasif, O White Nucleic acids research 26 (2), 544-548, 1998	1303	1998
Alignment of whole genomes AL Delcher, S Kasif, RD Fleischmann, J Peterson, O White, SL Salzberg Nucleic acids research 27 (11), 2369-2376, 1999	1194	1999
A system for induction of oblique decision trees SK Murthy, S Kasif, S Salzberg Journal of artificial intelligence research 2, 1-32, 1994	1180	1994
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ... PLoS genetics 4 (10), e1000242, 2008	1064	2008
Reconstructing and reprogramming the tumor-propagating potential of glioblastoma stem-like cells ML Suvà, E Rheinbay, SM Gillespie, AP Patel, H Wakimoto, SD Rabkin, ... Cell 157 (3), 580-594, 2014	743	2014
Extracting conserved gene expression motifs from gene expression data TM Murali, S Kasif Biocomputing 2003, 77-88, 2002	496	2002
Predicting protein function from protein/protein interaction data: a probabilistic approach S Letovsky, S Kasif Bioinformatics 19 (suppl_1), i197-i204, 2003	486	2003
Deep sequencing of the oral microbiome reveals signatures of periodontal disease B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ... PloS one 7 (6), e37919, 2012	402	2012
Whole-genome annotation by using evidence integration in functional-linkage networks U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif Proceedings of the National Academy of Sciences 101 (9), 2888-2893, 2004	399	2004
models for biological sequences SL Salzberg, DB Searls, S Kasif Computational methods in molecular biology, 45, 1998	268	1998
An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma E Rheinbay, ML Suvà, SM Gillespie, H Wakimoto, AP Patel, M Shahid, ... Cell reports 3 (5), 1567-1579, 2013	262	2013
Oc1: A randomized induction of oblique decision trees S Murthy, S Kasif, S Salzberg, R Beigel AAAI 93 (2), 322-327, 1993	258	1993
RankGene: identification of diagnostic genes based on expression data Y Su, TM Murali, V Pavlovic, M Schaffer, S Kasif Bioinformatics 19 (12), 1578-1579, 2003	226	2003
Network-based analysis of affected biological processes in type 2 diabetes models M Liu, A Liberzon, SW Kong, WR Lai, PJ Park, IS Kohane, S Kasif PLoS genetics 3 (6), e96, 2007	222	2007
Computational methods in molecular biology SL Salzberg, DB Searls, S Kasif Elsevier, 1998	218	1998
On the parallel complexity of discrete relaxation in constraint satisfaction networks S Kasif Artificial Intelligence 45 (3), 275-286, 1990	207	1990
Induction of oblique decision trees D Heath, S Kasif, S Salzberg IJCAI 1993, 1002-1007, 1993	198	1993

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