| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update AE Ostrovsky, A Mahmoud, AJ Lonie, A Syme, A Fouilloux, A Bretaudeau, ... Nucleic Acids Research, 2022 | 235* | 2022 |
| Community-driven data analysis training for biology B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Cell systems 6 (6), 752-758. e1, 2018 | 173 | 2018 |
| MOF-associated complexes ensure stem cell identity and Xist repression T Chelmicki, F Dündar, MJ Turley, T Khanam, T Aktas, F Ramírez, ... Elife 3, e02024, 2014 | 87 | 2014 |
| DOT1L promotes progenitor proliferation and primes neuronal layer identity in the developing cerebral cortex H Franz, A Villarreal, S Heidrich, P Videm, F Kilpert, I Mestres, F Calegari, ... Nucleic acids research 47 (1), 168-183, 2019 | 54 | 2019 |
| The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy BA Grüning, J Fallmann, D Yusuf, S Will, A Erxleben, F Eggenhofer, ... Nucleic acids research 45 (W1), W560-W566, 2017 | 48 | 2017 |
| BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles P Videm, D Rose, F Costa, R Backofen Bioinformatics 30 (12), i274-i282, 2014 | 24 | 2014 |
| FOXG1 Regulates PRKAR2B Transcriptionally and Posttranscriptionally via miR200 in the Adult Hippocampus SC Weise, G Arumugam, A Villarreal, P Videm, S Heidrich, N Nebel, ... Molecular neurobiology 56 (7), 5188-5201, 2019 | 19 | 2019 |
| Galaxy Training Network, Taylor J, Backofen R, Nekrutenko A, Grüning B B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Community-driven data analysis training for biology. Cell Syst 6 (6), 752-758, 2018 | 16 | 2018 |
| The RNA workbench 2.0: next generation RNA data analysis J Fallmann, P Videm, A Bagnacani, B Batut, MA Doyle, T Klingstrom, ... Nucleic acids research 47 (W1), W511-W515, 2019 | 10 | 2019 |
| Automated peptide mapping and protein-topographical annotation of proteomics data P Videm, D Gunasekaran, B Schröder, B Mayer, ML Biniossek, O Schilling BMC bioinformatics 15 (1), 1-7, 2014 | 9 | 2014 |
| ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data P Videm, A Kumar, O Zharkov, BA Grüning, R Backofen GigaScience 10 (2), giaa158, 2021 | 5 | 2021 |
| Community-driven ELIXIR activities in single-cell omics P Czarnewski, A Mahfouz, RA Calogero, PM Palagi, L Portell-Silva, ... F1000Research 11 (869), 869, 2022 | 1 | 2022 |
| Analysis of high-throughput sequencing data related to small non-coding RNAs biogenesis and function P Videm Universität Freiburg, 2021 | | 2021 |
