| PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes H Zafeiropoulos, HQ Viet, K Vasileiadou, A Potirakis, C Arvanitidis, ... GigaScience 9 (3), giaa022, 2020 | 29 | 2020 |
| PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes. GigaScience 9 H Zafeiropoulos, HQ Viet, K Vasileiadou, A Potirakis, C Arvanitidis, ... Oxford University Press 9, 111-2, 2020 | 9 | 2020 |
| 0s and 1s in marine molecular research: a regional HPC perspective H Zafeiropoulos, A Gioti, S Ninidakis, A Potirakis, S Paragkamian, ... GigaScience 10 (8), giab053, 2021 | 7 | 2021 |
| Geometric algorithms for sampling the flux space of metabolic networks A Chalkis, V Fisikopoulos, E Tsigaridas, H Zafeiropoulos arXiv preprint arXiv:2012.05503, 2020 | 4 | 2020 |
| PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types H Zafeiropoulos, S Paragkamian, S Ninidakis, GA Pavlopoulos, ... Microorganisms 10 (2), 293, 2022 | 2 | 2022 |
| The IMBBC HPC facility: history, configuration, usage statistics and related activities H Zafeiropoulos, A Gioti, S Ninidakis, P Antonis, S Paragkamian, A Nelina, ... | 2* | |
| The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data H Zafeiropoulos, L Gargan, S Hintikka, C Pavloudi, J Carlsson Metabarcoding and Metagenomics 5, e69657, 2021 | 1 | 2021 |
| PEMA: from the raw. fastq files of 16S rRNA and COI marker genes to the (M) OTU-table, a thorough metabarcoding analysis H Zafeiropoulos, HQ Viet, K Vasileiadou, A Potirakis, C Arvanitidis, ... bioRxiv, 709113, 2019 | 1 | 2019 |
| Bacteria are everywhere, even in your COI data: Τhe art of getting to know the unknown unknowns and shine light on the dark matter! H Zafeiropoulos, L Gargan, C Pavloudi, E Pafilis, J Carlsson ARPHA Conference Abstracts 4, e64966, 2021 | | 2021 |
| PEMA v2: addressing metabarcoding bioinformatics analysis challenges H Zafeiropoulos, C Pavloudi, E Pafilis ARPHA Conference Abstracts 4, e64902, 2021 | | 2021 |
| The santorini volcanic complex as a valuable source of enzymes for bioenergy PN Polymenakou, P Nomikou, H Zafeiropoulos, M Mandalakis, ... Energies 14 (5), 1414, 2021 | | 2021 |
| Bacteria are everywhere, even in your COI marker gene data! H Zafeiropoulos, L Gargan, S Hintikka, C Pavloudi, J Carlsson bioRxiv, 2021 | | 2021 |
| Automating the curation process of historical literature on marine biodiversity using text mining: the DECO workflow S Paragkamian, G Sarafidou, D Mavraki, C Pavloudi, J Beja, M Eliezer, ... Frontiers in Marine Science, 1243, 0 | | |
