| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 13403 | 2019 |
| Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature biotechnology 34 (8), 828-837, 2016 | 3245 | 2016 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1464 | 2018 |
| SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ... Nature methods 16 (4), 299-302, 2019 | 984 | 2019 |
| Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis T Nakatsuji, TH Chen, S Narala, KA Chun, AM Two, T Yun, F Shafiq, ... Science translational medicine 9 (378), eaah4680, 2017 | 979 | 2017 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 927 | 2018 |
| Minimum information about a biosynthetic gene cluster MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ... Nature chemical biology 11 (9), 625-631, 2015 | 842 | 2015 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 655 | 2018 |
| Global chemical effects of the microbiome include new bile-acid conjugations RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ... Nature 579 (7797), 123-129, 2020 | 370 | 2020 |
| Mass spectrometry searches using MASST M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ... Nature biotechnology 38 (1), 23-26, 2020 | 183 | 2020 |
| The impact of skin care products on skin chemistry and microbiome dynamics A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ... BMC biology 17, 1-20, 2019 | 156 | 2019 |
| Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides DD Nguyen, AV Melnik, N Koyama, X Lu, M Schorn, J Fang, K Aguinaldo, ... Nature microbiology 2 (1), 1-10, 2016 | 142 | 2016 |
| Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols PCDBSM Max Crüsemann, Ellis C. O˘Neill, Charles B. Larson, Alexey V. Melnik ... Journal of Natural Product, 1021, 2016 | 127* | 2016 |
| Three-dimensional microbiome and metabolome cartography of a diseased human lung N Garg, M Wang, E Hyde, RR da Silva, AV Melnik, I Protsyuk, ... Cell host & microbe 22 (5), 705-716. e4, 2017 | 110 | 2017 |
| Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products MH Medema, Y Paalvast, DD Nguyen, A Melnik, PC Dorrestein, E Takano, ... PLoS computational biology 10 (9), e1003822, 2014 | 109 | 2014 |
| Intermittent hypoxia and hypercapnia, a hallmark of obstructive sleep apnea, alters the gut microbiome and metabolome A Tripathi, AV Melnik, J Xue, O Poulsen, MJ Meehan, G Humphrey, ... Msystems 3 (3), 10.1128/msystems. 00020-18, 2018 | 104 | 2018 |
| 3D molecular cartography using LC–MS facilitated by Optimus and'ili software I Protsyuk, AV Melnik, LF Nothias, L Rappez, P Phapale, AA Aksenov, ... Nature protocols 13 (1), 134-154, 2018 | 100 | 2018 |
| Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data AA Aksenov, I Laponogov, Z Zhang, SLF Doran, I Belluomo, D Veselkov, ... Nature biotechnology 39 (2), 169-173, 2021 | 99 | 2021 |
| CA; Torres-Mendoza, D M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Gonzalez, DJ, 828-837, 0 | 94 | |
| A Cutibacterium acnes antibiotic modulates human skin microbiota composition in hair follicles J Claesen, JB Spagnolo, SF Ramos, KL Kurita, AL Byrd, AA Aksenov, ... Science translational medicine 12 (570), eaay5445, 2020 | 93 | 2020 |
Pieter C DorresteinUCSDVerified email at ucsd.edu
