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Adam M. Phillippy
Adam M. Phillippy
Director, Center for Genomics and Data Science Research, NHGRI, NIH
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy
Genome research 27 (5), 722-736, 2017
60862017
Versatile and open software for comparing large genomes
S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ...
Genome biology 5, 1-9, 2004
55612004
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru
Nature communications 9 (1), 5114, 2018
32192018
Mash: fast genome and metagenome distance estimation using MinHash
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...
Genome biology 17, 1-14, 2016
25002016
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-18, 2007
22452007
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
20142022
Interactive metagenomic visualization in a Web browser
BD Ondov, NH Bergman, AM Phillippy
BMC bioinformatics 12, 1-10, 2011
19492011
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
19012018
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
16022021
MUMmer4: A fast and versatile genome alignment system
G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin
PLoS computational biology 14 (1), e1005944, 2018
15432018
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
TJ Treangen, BD Ondov, S Koren, AM Phillippy
Genome Biol 15 (11), 524, 2014
15122014
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
13632019
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
A Rhie, BP Walenz, S Koren, AM Phillippy
Genome biology 21, 1-27, 2020
13552020
Fast algorithms for large-scale genome alignment and comparison
AL Delcher, A Phillippy, J Carlton, SL Salzberg
Nucleic acids research 30 (11), 2478-2483, 2002
12372002
Hybrid error correction and de novo assembly of single-molecule sequencing reads
S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ...
Nature biotechnology 30 (7), 693-700, 2012
11972012
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy
Nature biotechnology 33 (6), 623-630, 2015
10702015
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ...
Genome research 27 (5), 849-864, 2017
9232017
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
8842012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
Gigascience 2 (1), 2047-217X-2-10, 2013
7982013
Telomere-to-telomere assembly of a complete human X chromosome
KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ...
Nature 585 (7823), 79-84, 2020
7042020
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