| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 87 | 2021 |
| Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax G Greif, M Ponce-de-Leon, G Lamolle, M Rodriguez, D Piñeyro, ... BMC genomics 14 (1), 149, 2013 | 65 | 2013 |
| Systems Biology at the giga-scale: large multi-scale models of complex, heterogeneous multicellular systems A Montagud, M Ponce-de-Leon, A Valencia Current Opinion in Systems Biology, 2021 | 30 | 2021 |
| Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti M Ponce-de-León, F Montero, J Peretó BMC systems biology 7, 1-15, 2013 | 29 | 2013 |
| Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment A Ferrari, E Santus, D Cirillo, M Ponce-de-Leon, N Marino, MT Ferretti, ... NPJ digital medicine 4 (1), 9, 2021 | 25 | 2021 |
| COVID-19 Flow-Maps an open geographic information system on COVID-19 and human mobility for Spain M Ponce-de-Leon, J Del Valle, JM Fernandez, M Bernardo, D Cirillo, ... Scientific Data 8 (1), 310, 2021 | 23 | 2021 |
| Metabolic complementation in bacterial communities: necessary conditions and optimality M Mori, M Ponce-de-León, J Peretó, F Montero Frontiers in Microbiology 7, 1553, 2016 | 20 | 2016 |
| PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks M Ponce-de-Leon, A Montagud, V Noël, A Meert, G Pradas, E Barillot, ... npj Systems Biology and Applications 9 (1), 54, 2023 | 16 | 2023 |
| Parallel model exploration for tumor treatment simulations C Akasiadis, M Ponce-de-Leon, A Montagud, E Michelioudakis, ... Computational Intelligence, 2022 | 15 | 2022 |
| A strategy to calculate the patterns of nutrient consumption by microorganisms applying a two-level optimisation principle to reconstructed metabolic networks M Ponce-de-León, H Cancela, L Acerenza Journal of biological physics 34 (1-2), 73-90, 2008 | 14 | 2008 |
| Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach M Ponce-de-Leon, J Calle-Espinosa, J Pereto, F Montero PLOS One 10 (12), 2015 | 12 | 2015 |
| Optimizing dosage-specific treatments in a multi-scale model of a tumor growth M Ponce-de-Leon, A Montagud, C Akasiadis, J Schreiber, T Ntiniakou, ... Frontiers in Molecular Biosciences 9, 836794, 2022 | 11 | 2022 |
| The Purine Bias of Coding Sequences is Determined by Physicochemical Constraints on Proteins M Ponce de Leon, A Basilio de Miranda, F Alvarez-Valin, N Carels Bioinformatics and Biology Insights 2014 (8), 93-108, 2014 | 11* | 2014 |
| BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems G Saxena, M Ponce-de-Leon, A Montagud, D Vicente Dorca, A Valencia Computational Methods in Systems Biology, 266-279, 2021 | 10 | 2021 |
| Interactive extreme-scale analytics: towards battling cancer N Giatrakos, N Katzouris, A Deligiannakis, A Artikis, M Garofalakis, ... IEEE Technology and Society Magazine 38 (2), 54-61, 2019 | 10 | 2019 |
| Nature lessons: The whitefly bacterial endosymbiont is a minimal amino acid factory with unusual energetics. J Calle-Espinosa, M Ponce-de-Leon, D Santos-Garcia, FJ Silva, ... Journal of Theoretical Biology 407, 303-317, 2016 | 10 | 2016 |
| Infore: Interactive cross-platform analytics for everyone N Giatrakos, D Arnu, T Bitsakis, A Deligiannakis, M Garofalakis, ... Proceedings of the 29th ACM International Conference on Information …, 2020 | 9 | 2020 |
| Evaluating the policy of closing bars and restaurants in Cataluña and its effects on mobility and COVID19 incidence M Smith, M Ponce-de-Leon, A Valencia Scientific Reports 12 (1), 9132, 2022 | 8 | 2022 |
| Determinism and contingency shape metabolic complementation in an endosymbiotic consortium M Ponce-de-Leon, D Tamarit, J Calle-Espinosa, M Mori, A Latorre, ... Frontiers in microbiology 8, 2290, 2017 | 8 | 2017 |
| On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models M Ponce-de-León, I Apaolaza, A Valencia, FJ Planes Bioinformatics, 593277, 2019 | 7 | 2019 |
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
