Miguel Ponce de Leon, PhD
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Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax
G Greif, M Ponce-de-Leon, G Lamolle, M Rodriguez, D Piñeyro, ...
BMC genomics 14 (1), 149, 2013
Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti
M Ponce-de-León, F Montero, J Peretó
BMC systems biology 7 (1), 1-15, 2013
Metabolic complementation in bacterial communities: necessary conditions and optimality
M Mori, M Ponce-de-León, J Peretó, F Montero
Frontiers in microbiology 7, 1553, 2016
A strategy to calculate the patterns of nutrient consumption by microorganisms applying a two-level optimisation principle to reconstructed metabolic networks
M Ponce-de-León, H Cancela, L Acerenza
Journal of biological physics 34 (1-2), 73-90, 2008
Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment
A Ferrari, E Santus, D Cirillo, M Ponce-de-Leon, N Marino, MT Ferretti, ...
NPJ digital medicine 4 (1), 1-8, 2021
Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach
M Ponce-de-Leon, J Calle-Espinosa, J Pereto, F Montero
PLOS One 10 (12), 2015
The Purine Bias of Coding Sequences is Determined by Physicochemical Constraints on Proteins
M Ponce de Leon, A Basilio de Miranda, F Alvarez-Valin, N Carels
Bioinformatics and Biology Insights 2014 (8), 93-108, 2014
COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
bioRxiv, 2020
Nature lessons: The whitefly bacterial endosymbiont is a minimal amino acid factory with unusual energetics.
J Calle-Espinosa, M Ponce-de-Leon, D Santos-Garcia, FJ Silva, ...
Journal of Theoretical Biology 407, 303-317, 2016
Determinism and contingency shape metabolic complementation in an endosymbiotic consortium
M Ponce-de-Leon, D Tamarit, J Calle-Espinosa, M Mori, A Latorre, ...
Frontiers in microbiology 8, 2290, 2017
Interactive Extreme-Scale Analytics: Towards Battling Cancer
N Giatrakos, N Katzouris, A Deligiannakis, A Artikis, M Garofalakis, ...
IEEE Technology and Society Magazine 38 (2), 54-61, 2019
INforE: Interactive Cross-platform Analytics for Everyone
N Giatrakos, D Arnu, T Bitsakis, A Deligiannakis, M Garofalakis, ...
Proceedings of the 29th ACM International Conference on Information …, 2020
An interpretation of the ancestral codon from Miller's amino acids and nucleotide correlations in modern coding sequences
N Carels, MP de Leon
Bioinformatics and Biology insights 9, BBI. S24021, 2015
Parallel Model Exploration for Tumor Treatment Simulations
C Akasiadis, M Ponce-de-Leon, A Montagud, E Michelioudakis, ...
arXiv preprint arXiv:2103.14132, 2021
On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models
M Ponce-de-León, I Apaolaza, A Valencia, FJ Planes
Bioinformatics, 593277, 2019
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
Systems Biology at the giga-scale: large multi-scale models of complex, heterogeneous multicellular systems
A Montagud, A Ponce-de-Leon, Miguel, Valencia
Current Opinion in Systems Biology, 2021
BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems
G Saxena, M Ponce-de-Leon, A Montagud, D Vicente Dorca, A Valencia
Computational Methods in Systems Biology, 266-279, 2021
COVID-19 Flow-Maps: An open geographic information system on COVID-19 and human mobility for Spain
M Ponce-de-Leon, J del Valle, JM Fernandez, M Bernardo, D Cirillo, ...
medRxiv, 2021
A flux balance approach to integrate cell metabolism into multicelluar agent-based simulations
M Ponce De Leon
Barcelona Supercomputing Center, 2020
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