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Maxwell W Libbrecht
Maxwell W Libbrecht
Assistant Professor, Computing Science, Simon Fraser University
Verified email at sfu.ca - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
140142012
Machine learning applications in genetics and genomics
MW Libbrecht, WS Noble
Nature Reviews Genetics, 2015
19392015
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
14492011
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic acids research 41 (2), 827-841, 2013
6052013
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449-452, 2014
4192014
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
A Kundaje, S Kyriazopoulou-Panagiotopoulou, M Libbrecht, CL Smith, ...
Genome research 22 (9), 1735-1747, 2012
2042012
Obtaining genetics insights from deep learning via explainable artificial intelligence
G Novakovsky, N Dexter, MW Libbrecht, WW Wasserman, S Mostafavi
Nature Reviews Genetics 24 (2), 125-137, 2023
1602023
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
MW Libbrecht, F Ay, MM Hoffman, DM Gilbert, JA Bilmes, WS Noble
Genome Research 25, 544-557, 2015
852015
PREDICTD parallel epigenomics data imputation with cloud-based tensor decomposition
TJ Durham, MW Libbrecht, JJ Howbert, J Bilmes, WS Noble
Nature communications 9 (1), 1402, 2018
682018
Nucleotide sequence and DNaseI sensitivity are predictive of 3D chromatin architecture
J Schreiber, M Libbrecht, J Bilmes, WS Noble
BioRxiv, 103614, 2017
612017
A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types
MW Libbrecht, OL Rodriguez, Z Weng, JA Bilmes, MM Hoffman, ...
Genome biology 20, 1-14, 2019
582019
Distinct epigenetic features of differentiation-regulated replication origins
OK Smith, RG Kim, H Fu, MM Martin, CM Lin, K Utani, Y Zhang, AB Marks, ...
Epigenetics & chromatin 9, 1-17, 2016
512016
Segway 2.0: Gaussian mixture models and minibatch training
RCW Chan, MW Libbrecht, EG Roberts, JA Bilmes, WS Noble, ...
Bioinformatics 34 (4), 669-671, 2018
452018
Interferometric measurement of the resonant absorption and refractive index in rubidium gas
KG Libbrecht, MW Libbrecht
American journal of physics 74 (12), 1055-1060, 2006
312006
Choosing non‐redundant representative subsets of protein sequence data sets using submodular optimization
MW Libbrecht, JA Bilmes, WS Noble
Proteins: Structure, Function, and Bioinformatics 86 (4), 454-466, 2018
252018
Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns
MW Libbrecht, RCW Chan, MM Hoffman
PLoS computational biology 17 (10), e1009423, 2021
212021
Perspectives on ENCODE
F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama
Nature 583 (7818), 693-699, 2020
182020
Choosing panels of genomics assays using submodular optimization
K Wei, MW Libbrecht, JA Bilmes, WS Noble
Genome biology 17, 1-15, 2016
172016
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis
H Zabeti, N Dexter, AH Safari, N Sedaghat, M Libbrecht, L Chindelevitch
Algorithms for Molecular Biology 16 (1), 17, 2021
122021
SplitStrains, a tool to identify and separate mixed Mycobacterium tuberculosis infections from WGS data
E Gabbassov, M Moreno-Molina, I Comas, M Libbrecht, L Chindelevitch
Microbial Genomics 7 (6), 000607, 2021
122021
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Articles 1–20