Daniel E. Almonacid
Daniel E. Almonacid
Head of Data Science and Product Development, Biome Makers
Verified email at biomemakers.com - Homepage
Title
Cited by
Cited by
Year
The structure–function linkage database
E Akiva, S Brown, DE Almonacid, AE Barber 2nd, AF Custer, MA Hicks, ...
Nucleic acids research 42 (D1), D521-D530, 2014
1642014
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms
GL Holliday, DE Almonacid, GJ Bartlett, NM O'Boyle, JW Torrance, ...
Nucleic acids research 35 (suppl_1), D515-D520, 2007
782007
MACiE: exploring the diversity of biochemical reactions
GL Holliday, C Andreini, JD Fischer, SA Rahman, DE Almonacid, ...
Nucleic acids research 40 (D1), D783-D789, 2012
762012
Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily
FH Wallrapp, JJ Pan, G Ramamoorthy, DE Almonacid, BS Hillerich, ...
Proceedings of the National Academy of Sciences 110 (13), E1196-E1202, 2013
602013
The structure at 2 Å resolution of Phycocyanin from Gracilaria chilensis and the energy transfer network in a PC–PC complex
C Contreras-Martel, A Matamala, C Bruna, G Poo-Caamaño, D Almonacid, ...
Biophysical chemistry 125 (2), 388-396, 2007
582007
Method and system for microbiome-derived diagnostics and therapeutics
Z Apte, J Richman, SR Behbahani, D Almonacid
US Patent 9,703,929, 2017
572017
The chemistry of protein catalysis
GL Holliday, DE Almonacid, JBO Mitchell, JM Thornton
Journal of molecular biology 372 (5), 1261-1277, 2007
512007
MACiE: a database of enzyme reaction mechanisms
GL Holliday, GJ Bartlett, DE Almonacid, NM O'Boyle, P Murray-Rust, ...
Bioinformatics 21 (23), 4315-4316, 2005
482005
Toward mechanistic classification of enzyme functions
DE Almonacid, PC Babbitt
Current opinion in chemical biology 15 (3), 435-442, 2011
442011
Using reaction mechanism to measure enzyme similarity
NM O'Boyle, GL Holliday, DE Almonacid, JBO Mitchell
Journal of molecular biology 368 (5), 1484-1499, 2007
442007
16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome
DE Almonacid, L Kraal, FJ Ossandon, YV Budovskaya, JP Cardenas, ...
PLoS One 12 (5), e0176555, 2017
422017
Method and system for microbiome-derived diagnostics and therapeutics
Z Apte, J Richman, D Almonacid
US Patent 10,242,160, 2019
412019
Self-sampling for human papillomavirus testing: increased cervical cancer screening participation and incorporation in international screening programs
S Gupta, C Palmer, EM Bik, JP Cardenas, H Nuñez, L Kraal, SW Bird, ...
Frontiers in public health 6, 77, 2018
412018
Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function
DE Almonacid, ER Yera, JBO Mitchell, PC Babbitt
PLoS Comput Biol 6 (3), e1000700, 2010
412010
Method and system for microbiome-derived diagnostics and therapeutics for locomotor system conditions
Z Apte, D Almonacid, J Richman
US Patent App. 15/679,633, 2017
382017
Method and system for microbiome-derived characterization, diagnostics and therapeutics for conditions associated with functional features
Z Apte, D Almonacid, J Richman, SR Behbahani
US Patent 10,357,157, 2019
362019
Method and system for microbiome-derived diagnostics and therapeutics for neurological health issues
Z Apte, D Almonacid, J Richman, SR Belbahani
US Patent App. 15/294,482, 2017
362017
Method and system for microbiome-derived diagnostics and therapeutics
Z Apte, J Richman, D Almonacid
US Patent 10,331,857, 2019
352019
Method and system for microbiome analysis
Z Apte, J Richman, D Almonacid
US Patent 10,294,532, 2019
352019
Method and system for microbiome-derived diagnostics and therapeutics
Z Apte, J Richman, D Almonacid
US Patent 10,289,805, 2019
352019
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