Luis M. Rodriguez-R
Title
Cited by
Cited by
Year
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru
Nature communications 9 (1), 1-8, 2018
6462018
The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
LM Rodriguez-R, KT Konstantinidis
PeerJ Preprints, 2016
5222016
Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics
R Poretsky, LM Rodriguez-R, C Luo, D Tsementzi, KT Konstantinidis
PloS one 9 (4), e93827, 2014
4152014
Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications
N DeLeon-Rodriguez, TL Lathem, LM Rodriguez-R, JM Barazesh, ...
Proceedings of the National Academy of Sciences 110 (7), 2575-2580, 2013
3602013
Bypassing Cultivation To Identify Bacterial Species
LM Rodriguez-R, KT Konstantinidis
Microbe 9 (3), 111-118, 2014
3432014
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
C Luo, LM Rodriguez-r, KT Konstantinidis
Nucleic acids research 42 (8), e73-e73, 2014
2022014
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level
LM Rodriguez-R, S Gunturu, WT Harvey, R Rosselló-Mora, JM Tiedje, ...
Nucleic acids research 46 (W1), W282-W288, 2018
1722018
Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets
LM Rodriguez-R, KT Konstantinidis
Bioinformatics 30 (5), 629-635, 2013
1492013
Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill
LM Rodriguez-r, WA Overholt, C Hagan, M Huettel, JE Kostka, ...
The ISME journal 9 (9), 1928-1940, 2015
1352015
Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease.
A Cárdenas, LM Rodriguez-R, V Pizarro, LF Cadavid, C Arévalo-Ferro
The ISME journal, 2011
1312011
Soil microbial community responses to a decade of warming as revealed by comparative metagenomics
C Luo, LM Rodriguez-R, ER Johnston, L Wu, L Cheng, K Xue, Q Tu, ...
Applied and environmental microbiology 80 (5), 1777-1786, 2014
1192014
Detecting nitrous oxide reductase (nosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle
LH Orellana, LM Rodriguez-R, S Higgins, JC Chee-Sanford, RA Sanford, ...
mBio 10 (5), 01193-14, 2014
116*2014
Estimating coverage in metagenomic data sets and why it matters
LM Rodriguez-r, KT Konstantinidis
The ISME journal 8 (11), 2349-2351, 2014
1012014
SAR11 bacteria linked to ocean anoxia and nitrogen loss
D Tsementzi, J Wu, S Deutsch, S Nath, LM Rodriguez-R, AS Burns, ...
Nature 536 (7615), 179-183, 2016
892016
An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains
AL Pérez-Quintero, LM Rodriguez-R, A Dereeper, C López, R Koebnik, ...
PloS one 8 (7), e68464, 2013
752013
Genomes-based phylogeny of the genus Xanthomonas
LM Rodriguez-R, A Grajales, ML Arrieta-Ortiz, C Salazar, S Restrepo, ...
BMC microbiology 12 (1), 1-14, 2012
702012
Metagenomics reveals pervasive bacterial populations and reduced community diversity across the Alaska tundra ecosystem
ER Johnston, LM Rodriguez-R, C Luo, MM Yuan, L Wu, Z He, ...
Frontiers in microbiology 7, 579, 2016
572016
Biofilms on hospital shower hoses: characterization and implications for nosocomial infections
MJ Soto-Giron, LM Rodriguez-R, C Luo, M Elk, H Ryu, J Hoelle, ...
Applied and environmental microbiology 82 (9), 2872-2883, 2016
54*2016
Nonpareil 3: fast estimation of metagenomic coverage and sequence diversity
LM Rodriguez-R, S Gunturu, JM Tiedje, JR Cole, KT Konstantinidis
MSystems 3 (3), 2018
432018
New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by …
L Poulin, P Grygiel, M Magne, L Gagnevin, LM Rodriguez-R, NF Serna, ...
Applied and environmental microbiology 81 (2), 688-698, 2015
412015
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Articles 1–20