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Peter Krusche
Peter Krusche
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Year
Strelka2: fast and accurate calling of germline and somatic variants
S Kim, K Scheffler, AL Halpern, MA Bekritsky, E Noh, M Källberg, X Chen, ...
Nature methods 15 (8), 591-594, 2018
10032018
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
MA Eberle, E Fritzilas, P Krusche, M Källberg, BL Moore, MA Bekritsky, ...
Genome research 27 (1), 157-164, 2017
3812017
Best practices for benchmarking germline small-variant calls in human genomes
P Krusche, L Trigg, PC Boutros, CE Mason, FM De La Vega, BL Moore, ...
Nature biotechnology 37 (5), 555-560, 2019
3022019
Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle
C Feillet, P Krusche, F Tamanini, RC Janssens, MJ Downey, P Martin, ...
Proceedings of the National Academy of Sciences 111 (27), 9828-9833, 2014
2182014
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions
E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ...
Bioinformatics 35 (22), 4754-4756, 2019
1872019
Paragraph: a graph-based structural variant genotyper for short-read sequence data
S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ...
Genome biology 20, 1-13, 2019
1222019
Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants
L Baxter, A Jironkin, R Hickman, J Moore, C Barrington, P Krusche, ...
The Plant Cell 24 (10), 3949-3965, 2012
802012
Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing
R Laranjeiro, TK Tamai, E Peyric, P Krusche, S Ott, D Whitmore
Proceedings of the National Academy of Sciences 110 (17), 6835-6840, 2013
672013
Evolutionary analysis of regulatory sequences (EARS) in plants
E Picot, P Krusche, A Tiskin, I Carré, S Ott
The Plant Journal 64 (1), 165-176, 2010
372010
Genomic plasticity and rapid host switching can promote the evolution of generalism: a case study in the zoonotic pathogen Campylobacter
DJ Woodcock, P Krusche, NJC Strachan, KJ Forbes, FM Cohan, G Méric, ...
Scientific Reports 7 (1), 9650, 2017
332017
Efficient longest common subsequence computation using bulk-synchronous parallelism
P Krusche, A Tiskin
International Conference on Computational Science and Its Applications, 165-174, 2006
292006
New algorithms for efficient parallel string comparison
P Krusche, A Tiskin
Proceedings of the twenty-second annual ACM symposium on Parallelism iná…, 2010
272010
Advancing data science in drug development through an innovative computational framework for data sharing and statistical analysis
AM Mallon, DA Häring, F Dahlke, P Aarden, S Afyouni, D Delbarre, ...
BMC Medical Research Methodology 21 (1), 1-11, 2021
132021
Experimental evaluation of BSP programming libraries
P Krusche
Parallel Processing Letters 18 (01), 7-21, 2008
132008
Parallel longest increasing subsequences in scalable time and memory
P Krusche, A Tiskin
International Conference on Parallel Processing and Applied Mathematics, 176-185, 2009
112009
Efficient parallel string comparison
P Krusche, A Tiskin
Proceedings of ParCo 38, 193-200, 2008
92008
Computing alignment plots efficiently
P Krusche, A Tiskin
Parallel Computing: From Multicores and GPU's to Petascale 19, 158-165, 2010
82010
Analysis of 5ógene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals
NJ Davies, P Krusche, E Tauber, S Ott
BMC Evolutionary Biology 15, 1-13, 2015
72015
String comparison by transposition networks
P Krusche, A Tiskin
arXiv preprint arXiv:0903.3579, 2009
62009
Author Correction: Best practices for benchmarking germline small-variant calls in human genomes.
P Krusche, L Trigg, PC Boutros, CE Mason, FM De La Vega, BL Moore, ...
Nature Biotechnology 37 (5), 567-567, 2019
32019
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