| eccDNAs are apoptotic products with high innate immunostimulatory activity Y Wang, M Wang, MN Djekidel, H Chen, D Liu, FW Alt, Y Zhang Nature 599 (7884), 308-314, 2021 | 127 | 2021 |
| Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction A Bhattacherjee, MN Djekidel, R Chen, W Chen, LM Tuesta, Y Zhang Nature communications 10 (1), 4169, 2019 | 117 | 2019 |
| Decoding molecular and cellular heterogeneity of mouse nucleus accumbens R Chen, TR Blosser, MN Djekidel, J Hao, A Bhattacherjee, W Chen, ... Nature neuroscience 24 (12), 1757-1771, 2021 | 95 | 2021 |
| Distinct dynamics and functions of H2AK119ub1 and H3K27me3 in mouse preimplantation embryos Z Chen, MN Djekidel, Y Zhang Nature Genetics 53 (4), 551-563, 2021 | 93 | 2021 |
| Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cells X Fu, X Wu, MN Djekidel, Y Zhang Nature cell biology 21 (7), 835-844, 2019 | 89 | 2019 |
| BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions Z Liang, G Li, Z Wang, MN Djekidel, Y Li, MP Qian, MQ Zhang, Y Chen Nature communications 8 (1), 1622, 2017 | 72 | 2017 |
| FIND: difFerential chromatin INteractions Detection using a spatial Poisson process MN Djekidel, Y Chen, MQ Zhang Genome research 28 (3), 412-422, 2018 | 69 | 2018 |
| uwot: The uniform manifold approximation and projection (UMAP) method for dimensionality reduction J Melville, A Lun, MN Djekidel, Y Hao R package version 0.1 10, 2020 | 65 | 2020 |
| A transcriptional roadmap for 2C-like–to–pluripotent state transition X Fu, MN Djekidel, Y Zhang Science advances 6 (22), eaay5181, 2020 | 60 | 2020 |
| Acute depletion of CTCF rewires genome-wide chromatin accessibility B Xu, H Wang, S Wright, J Hyle, Y Zhang, Y Shao, M Niu, Y Fan, ... Genome Biology 22 (1), 244, 2021 | 36 | 2021 |
| Reprogramming of chromatin accessibility in somatic cell nuclear transfer is DNA replication independent MN Djekidel, A Inoue, S Matoba, T Suzuki, C Zhang, F Lu, L Jiang, ... Cell reports 23 (7), 1939-1947, 2018 | 34 | 2018 |
| Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation Y Li, Y He, Z Liang, Y Wang, F Chen, MN Djekidel, G Li, X Zhang, S Xiang, ... Cell death & disease 9 (2), 200, 2018 | 33 | 2018 |
| 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process MN Djekidel, Z Liang, Q Wang, Z Hu, G Li, Y Chen, MQ Zhang Genome biology 16, 1-16, 2015 | 24 | 2015 |
| Uwot: The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction. R Package Version 0.1. 10 J Melville, A Lun, M Djekidel, Y Hao CRAN, 2020 | 22 | 2020 |
| HiC‐3DViewer: a new tool to visualize Hi‐C data in 3D space MN Djekidel, M Wang, MQ Zhang, J Gao Quantitative Biology 5 (2), 183-190, 2017 | 18 | 2017 |
| Cell type–specific mechanism of Setd1a heterozygosity in schizophrenia pathogenesis R Chen, Y Liu, MN Djekidel, W Chen, A Bhattacherjee, Z Chen, ... Science Advances 8 (9), eabm1077, 2022 | 15 | 2022 |
| Developing bioimaging and quantitative methods to study 3D genome J Gao, X Yang, M Nadhir Djekidel, Y Wang, P Xi, MQ Zhang Quantitative Biology 4 (2), 129-147, 2016 | 14 | 2016 |
| uwot: The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction (2020) J Melville, A Lun, MN Djekidel, Y Hao URL https://CRAN. R-project. org/package= uwot, 0 | 10 | |
| Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation J Hyle, MN Djekidel, J Williams, S Wright, Y Shao, B Xu, C Li Genome Biology 24 (1), 14, 2023 | 7 | 2023 |
| CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes MN Djekidel, W Rosikiewicz, JC Peng, TD Kanneganti, Y Hui, H Jin, ... bioRxiv, 2021 | 6 | 2021 |
Yi ZhangHHMI, Harvard Medical School & Boston Children's HospitalVerified email at genetics.med.harvard.edu
