Ali Masoudi-Nejad, Professor

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Ali NajafiAssociate professor of Bioinformatics and Systems BiologyVerified email at ut.ac.ir
Zaynab MousavianKarolinska InstituteVerified email at ki.se
Yosef Masoudi-SobhanzadehQueen's UniversityVerified email at queensu.ca
Ali MoeiniUniversity of TehranVerified email at ut.ac.ir
Abbas Nowzari-Daliniassociate prof., university of tehranVerified email at ut.ac.ir
Habib MotieGhaderIslamic Azad University Tabriz BranchVerified email at ut.ac.ir
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de
Gholamreza BidkhoriResearcher at King's College LondonVerified email at kcl.ac.uk
Yazdan AsgariGustave Roussy, CESP, Team "Exposome and Heredity"Verified email at inserm.fr
Saman Hosseini AshtianiPhD student, Stockholm UniversityVerified email at dbb.su.se
Zahra NarimaniAssistant Professor, Institute for advanced studies in Basic Sciences (IASBS), Zanjan, IranVerified email at iasbs.ac.ir
Hossein LanjanianCellular and Molecular Endocrine Research Center, Research Institute for Endocrine Sciences, ShahidVerified email at ut.ac.ir
Nazanin HosseinkhanInstitute of Endocrinology and Metabolism, Iran University of Medical Sciences(IUMS)Verified email at ut.ac.ir
Massoud AmanlouProfessor of Medicinal Chemistry, Tehran University of Medical SciencesVerified email at tums.ac.ir
Karim AbbasiPostdoctoral Research Fellow at Sharif University of TechnologyVerified email at sharif.edu
Yadollah OmidiNova Southeastern University, Full Professor at College of Pharmacy, FloridaVerified email at nova.edu
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Shuhei NasudaLaboratory of Plant Breeding, Graduate School of Agriculture, Kyoto UniversityVerified email at kais.kyoto-u.ac.jp
Shuichi KawashimaDatabase Center for Life ScienceVerified email at dbcls.rois.ac.jp

Ali Masoudi-Nejad, Professor

Laboratory of Systems Biology and Bioinformatics (LBB), University of Tehran

Verified email at ut.ac.ir - Homepage

Computational systems biology Cancer systems biology Network-based biomarker development Non-coding RNA analysis Network bio


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Kavosh: a new algorithm for finding network motifs ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ... BMC bioinformatics 10 (1), 1-12, 2009	271	2009
Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data E Wang, N Zaman, S Mcgee, JS Milanese, A Masoudi-Nejad, ... Seminars in cancer biology 30, 4-12, 2015	241	2015
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments A Masoudi-Nejad, K Tonomura, S Kawashima, Y Moriya, M Suzuki, M Itoh, ... Nucleic acids research 34 (suppl_2), W459-W462, 2006	204	2006
Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma G Bidkhori, Z Narimani, S Hosseini Ashtiani, A Moeini, A Nowzari-Dalini, ... PloS one 8 (7), e67552, 2013	181	2013
MODA: an efficient algorithm for network motif discovery in biological networks S Omidi, F Schreiber, A Masoudi-Nejad Genes & genetic systems 84 (5), 385-395, 2009	166	2009
Computational prediction of protein–protein interaction networks: algorithms and resources J Zahiri, J Hannon Bozorgmehr, A Masoudi-Nejad Current genomics 14 (6), 397-414, 2013	157	2013
PPIevo: Protein–protein interaction prediction from PSSM based evolutionary information J Zahiri, O Yaghoubi, M Mohammad-Noori, R Ebrahimpour, ... Genomics 102 (4), 237-242, 2013	145	2013
Transfer of rye chromosome segments to wheat by a gametocidal system A Masoudi-Nejad, S Nasuda, RA McIntosh, TR Endo, TR Endo Chromosome Research 10, 349-357, 2002	138	2002
A hybrid gene selection algorithm for microarray cancer classification using genetic algorithm and learning automata H Motieghader, A Najafi, B Sadeghi, A Masoudi-Nejad Informatics in Medicine Unlocked 9, 246-254, 2017	116	2017
DeepCDA: deep cross-domain compound–protein affinity prediction through LSTM and convolutional neural networks K Abbasi, P Razzaghi, A Poso, M Amanlou, JB Ghasemi, ... Bioinformatics 36 (17), 4633-4642, 2020	106	2020
Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation Y Asgari, Z Zabihinpour, A Salehzadeh-Yazdi, F Schreiber, ... Genomics 105 (5-6), 275-281, 2015	104	2015
FeatureSelect: a software for feature selection based on machine learning approaches Y Masoudi-Sobhanzadeh, H Motieghader, A Masoudi-Nejad BMC bioinformatics 20 (1), 1-17, 2019	102	2019
Drug–target interaction prediction via chemogenomic space: learning-based methods Z Mousavian, A Masoudi-Nejad Expert opinion on drug metabolism & toxicology 10 (9), 1273-1287, 2014	98	2014
Building blocks of biological networks: a review on major network motif discovery algorithms A Masoudi-Nejad, F Schreiber, ZRM Kashani IET systems biology 6 (5), 164-174, 2012	91	2012
Drug–target interaction prediction from PSSM based evolutionary information Z Mousavian, S Khakabimamaghani, K Kavousi, A Masoudi-Nejad Journal of pharmacological and toxicological methods 78, 42-51, 2016	85	2016
Drug databases and their contributions to drug repurposing Y Masoudi-Sobhanzadeh, Y Omidi, M Amanlou, A Masoudi-Nejad Genomics 112 (2), 1087-1095, 2020	83	2020
Controllability in cancer metabolic networks according to drug targets as driver nodes Y Asgari, A Salehzadeh-Yazdi, F Schreiber, A Masoudi-Nejad PloS one 8 (11), e79397, 2013	67	2013
Drug-target and disease networks: polypharmacology in the post-genomic era A Masoudi-Nejad, Z Mousavian, JH Bozorgmehr In silico pharmacology 1, 1-4, 2013	65	2013
LocFuse: human protein–protein interaction prediction via classifier fusion using protein localization information J Zahiri, M Mohammad-Noori, R Ebrahimpour, S Saadat, JH Bozorgmehr, ... Genomics 104 (6), 496-503, 2014	62	2014
Emerging roles of epigenetic mechanisms in Parkinson’s disease E Habibi, A Masoudi-Nejad, HM Abdolmaleky, SJ Haggarty Functional & integrative genomics 11, 523-537, 2011	62	2011

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