Ali Masoudi-Nejad, Ph.D.
Ali Masoudi-Nejad, Ph.D.
Associate Professor of Systems Biology and Bioinformatics
Verified email at - Homepage
Cited by
Cited by
Kavosh: a new algorithm for finding network motifs
ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ...
BMC bioinformatics 10 (1), 1-12, 2009
Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data
E Wang, N Zaman, S Mcgee, JS Milanese, A Masoudi-Nejad, ...
Seminars in cancer biology 30, 4-12, 2015
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments
A Masoudi-Nejad, K Tonomura, S Kawashima, Y Moriya, M Suzuki, M Itoh, ...
Nucleic acids research 34 (suppl_2), W459-W462, 2006
MODA: an efficient algorithm for network motif discovery in biological networks
S Omidi, F Schreiber, A Masoudi-Nejad
Genes & genetic systems 84 (5), 385-395, 2009
Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma
G Bidkhori, Z Narimani, S Hosseini Ashtiani, A Moeini, A Nowzari-Dalini, ...
PloS one 8 (7), e67552, 2013
Transfer of rye chromosome segments to wheat by a gametocidal system
A Masoudi-Nejad, S Nasuda, RA McIntosh, TR Endo
Chromosome Research 10 (5), 349-357, 2002
Computational prediction of protein–protein interaction networks: algorithms and resources
J Zahiri, J Hannon Bozorgmehr, A Masoudi-Nejad
Current genomics 14 (6), 397-414, 2013
PPIevo: Protein–protein interaction prediction from PSSM based evolutionary information
J Zahiri, O Yaghoubi, M Mohammad-Noori, R Ebrahimpour, ...
Genomics 102 (4), 237-242, 2013
Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation
Y Asgari, Z Zabihinpour, A Salehzadeh-Yazdi, F Schreiber, ...
Genomics 105 (5-6), 275-281, 2015
Building blocks of biological networks: a review on major network motif discovery algorithms
A Masoudi-Nejad, F Schreiber, ZRM Kashani
IET systems biology 6 (5), 164-174, 2012
A hybrid gene selection algorithm for microarray cancer classification using genetic algorithm and learning automata
H Motieghader, A Najafi, B Sadeghi, A Masoudi-Nejad
Informatics in Medicine Unlocked 9, 246-254, 2017
Drug–target interaction prediction via chemogenomic space: learning-based methods
Z Mousavian, A Masoudi-Nejad
Expert opinion on drug metabolism & toxicology 10 (9), 1273-1287, 2014
Drug–target interaction prediction from PSSM based evolutionary information
Z Mousavian, S Khakabimamaghani, K Kavousi, A Masoudi-Nejad
Journal of pharmacological and toxicological methods 78, 42-51, 2016
Reconstruction of Arabidopsis thaliana fully integrated small RNA pathway
SA Jamalkandi, A Masoudi-Nejad
Functional & integrative genomics 9 (4), 419-432, 2009
Emerging roles of epigenetic mechanisms in Parkinson’s disease
E Habibi, A Masoudi-Nejad, HM Abdolmaleky, SJ Haggarty
Functional & integrative genomics 11 (4), 523-537, 2011
QuateXelero: an accelerated exact network motif detection algorithm
S Khakabimamaghani, I Sharafuddin, N Dichter, I Koch, A Masoudi-Nejad
PloS one 8 (7), e68073, 2013
LocFuse: human protein–protein interaction prediction via classifier fusion using protein localization information
J Zahiri, M Mohammad-Noori, R Ebrahimpour, S Saadat, JH Bozorgmehr, ...
Genomics 104 (6), 496-503, 2014
Controllability in cancer metabolic networks according to drug targets as driver nodes
Y Asgari, A Salehzadeh-Yazdi, F Schreiber, A Masoudi-Nejad
PloS one 8 (11), e79397, 2013
Molecular epidemiology of hepatitis C virus among injection drug users in Iran: a slight change in prevalence of HCV genotypes over time
K Samimi-Rad, MN Toosi, A Masoudi-Nejad, A Najafi, R Rahimnia, ...
Archives of virology 157 (10), 1959-1965, 2012
FeatureSelect: a software for feature selection based on machine learning approaches
Y Masoudi-Sobhanzadeh, H Motieghader, A Masoudi-Nejad
BMC bioinformatics 20 (1), 1-17, 2019
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