Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ... Nature genetics 44 (2), 148-156, 2012 | 596 | 2012 |
Enhancer loops appear stable during development and are associated with paused polymerase Y Ghavi-Helm, FA Klein, T Pakozdi, L Ciglar, D Noordermeer, W Huber, ... Nature 512 (7512), 96-100, 2014 | 538 | 2014 |
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression Y Ghavi-Helm, A Jankowski, S Meiers, RR Viales, JO Korbel, ... Nature genetics 51 (8), 1272-1282, 2019 | 313 | 2019 |
Mediator-dependent recruitment of TFIIH modules in preinitiation complex C Esnault, Y Ghavi-Helm, S Brun, J Soutourina, N Van Berkum, ... Molecular cell 31 (3), 337-346, 2008 | 211 | 2008 |
Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species C Cazalet, S Jarraud, Y Ghavi-Helm, F Kunst, P Glaser, J Etienne, ... Genome research 18 (3), 431-441, 2008 | 211 | 2008 |
FourCSeq: analysis of 4C sequencing data FA Klein, T Pakozdi, S Anders, Y Ghavi-Helm, EEM Furlong, W Huber Bioinformatics 31 (19), 3085-3091, 2015 | 99 | 2015 |
Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription Y Ghavi-Helm, M Michaut, J Acker, JC Aude, P Thuriaux, M Werner, ... Genes & development 22 (14), 1934-1947, 2008 | 85 | 2008 |
Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells L Carriere, S Graziani, O Alibert, Y Ghavi-Helm, F Boussouar, ... Nucleic acids research 40 (1), 270-283, 2012 | 84 | 2012 |
Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements J Erceg, T Pakozdi, R Marco-Ferreres, Y Ghavi-Helm, C Girardot, ... Genes & development 31 (6), 590-602, 2017 | 81 | 2017 |
m6A RNA methylation regulates promoter-proximal pausing of RNA polymerase II J Akhtar, Y Renaud, S Albrecht, Y Ghavi-Helm, JY Roignant, M Silies, ... Molecular Cell 81 (16), 3356-3367. e6, 2021 | 53 | 2021 |
Sequential actions of EOMES and T-BET promote stepwise maturation of natural killer cells J Zhang, S Le Gras, K Pouxvielh, F Faure, L Fallone, N Kern, M Moreews, ... Nature communications 12 (1), 5446, 2021 | 50 | 2021 |
Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation T Schauer, Y Ghavi‐Helm, T Sexton, C Albig, C Regnard, G Cavalli, ... EMBO reports 18 (10), 1854-1868, 2017 | 38 | 2017 |
Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways M Kwapisz, M Wery, D Despres, Y Ghavi‐Helm, J Soutourina, P Thuriaux, ... The EMBO journal 27 (18), 2411-2421, 2008 | 38 | 2008 |
Functional consequences of chromosomal rearrangements on gene expression: not so deleterious after all? Y Ghavi-Helm Journal of molecular biology 432 (3), 665-675, 2020 | 21 | 2020 |
Wilczyn ski B, Riddell A, Furlong EE. 2012. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ... Nature Genetics 44, 148-156, 0 | 21 | |
PHD and TFIIS-Like domains of the Bye1 transcription factor determine its multivalent genomic distribution M Pinskaya, Y Ghavi-Helm, S Mariotte-Labarre, A Morillon, J Soutourina, ... PloS one 9 (7), e102464, 2014 | 18 | 2014 |
Analyzing transcription factor occupancy during embryo development using ChIP-seq Y Ghavi-Helm, EEM Furlong Gene Regulatory Networks: Methods and Protocols, 229-245, 2012 | 18 | 2012 |
Zeb1 represses TCR signaling, promotes the proliferation of T cell progenitors and is essential for NK1.1+ T cell development J Zhang, M Wencker, Q Marliac, A Berton, U Hasan, R Schneider, ... Cellular & Molecular Immunology 18 (9), 2140-2152, 2021 | 16 | 2021 |
Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila Y Ghavi-Helm, B Zhao, EEM Furlong Drosophila: Methods and Protocols, 263-277, 2016 | 16 | 2016 |
3D genome organisation in Drosophila C Moretti, I Stévant, Y Ghavi-Helm Briefings in Functional Genomics 19 (2), 92-100, 2020 | 12 | 2020 |