Pengyi Yang

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Citations	3371	2593
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i10-index	55	47

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Jean Yee Hwa YangUniversity of SydneyVerified email at sydney.edu.au
David E JamesThe University of SydneyVerified email at sydney.edu.au
Sean HumphreySydney UniversityVerified email at sydney.edu.au
Raja JothiSenior Investigator, National Institutes of HealthVerified email at mail.nih.gov
Daniel J. FazakerleyMRC Career Development Fellow, Institute of Metabolic Science, Metabolic Research LaboratoriesVerified email at cam.ac.uk
Albert Y. ZomayaPeter Nicol Russell Chair Professor of Computer Science, Sydney UniversityVerified email at sydney.edu.au
James Geoffrey BurchfieldThe University of SydneyVerified email at sydney.edu.au
Bing Bing ZhouSchool of Information Technologies, The University of SydneyVerified email at sydney.edu.au
Yingxin LinUniversity of SydneyVerified email at sydney.edu.au
Senthilkumar CinghuStaff Scientist,ESCBL,NIEHS/NIH,RTP,NC-27709,USAVerified email at niehs.nih.gov
Benjamin ParkerUniversity of MelbourneVerified email at unimelb.edu.au
Andrew OldfieldResearcher, IGHVerified email at igh.cnrs.fr
Rima ChaudhuriUniversity of SydneyVerified email at sydney.edu.au
David M SpeedVerified email at optusnet.com.au
Taiyun KimPhD candidate, University of SydneyVerified email at sydney.edu.au
Hani Jieun KimThe University of SydneyVerified email at sydney.edu.au
Jacqueline StöckliThe University of SydneyVerified email at sydney.edu.au
Guang YangResearch Fellow, School of Life & Environmental Sciences, The University of SydneyVerified email at sydney.edu.au
Ellis PatrickUniversity of SydneyVerified email at sydney.edu.au
Shila GhazanfarResearch Associate, CRUK Cambridge InstituteVerified email at cruk.cam.ac.uk

Pengyi Yang

Group Leader at CMRI; Charles Perkins Centre, Associate Professor, University of Sydney

Verified email at sydney.edu.au - Homepage

Computational systems biology Systems stem cell biology Single-cell multi-omics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A review of ensemble methods in bioinformatics P Yang, Y Hwa Yang, B Bing Zhou, A Y Zomaya Current Bioinformatics 5 (4), 296-308, 2010	449*	2010
Dynamic adipocyte phosphoproteome reveals that Akt directly regulates mTORC2 SJ Humphrey, G Yang, P Yang, DJ Fazakerley, J Stöckli, JY Yang, ... Cell metabolism 17 (6), 1009-1020, 2013	352	2013
Global phosphoproteomic analysis of human skeletal muscle reveals a network of exercise-regulated kinases and AMPK substrates NJ Hoffman, BL Parker, R Chaudhuri, KH Fisher-Wellman, M Kleinert, ... Cell metabolism 22 (5), 922-935, 2015	285	2015
DNMT1 is essential for mammary and cancer stem cell maintenance and tumorigenesis R Pathania, S Ramachandran, S Elangovan, R Padia, P Yang, S Cinghu, ... Nature communications 6 (1), 1-11, 2015	194	2015
Fip1 regulates mRNA alternative polyadenylation to promote stem cell self‐renewal B Lackford, C Yao, GM Charles, L Weng, X Zheng, EA Choi, X Xie, J Wan, ... The EMBO journal 33 (8), 878-889, 2014	140	2014
Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors AJ Oldfield, P Yang, AE Conway, S Cinghu, JM Freudenberg, ... Molecular cell 55 (5), 708-722, 2014	137	2014
A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data P Yang, BB Zhou, Z Zhang, AY Zomaya BMC bioinformatics 11 (1), 1-12, 2010	87	2010
A particle swarm based hybrid system for imbalanced medical data sampling P Yang, L Xu, BB Zhou, Z Zhang, AY Zomaya BMC genomics 10 (3), 1-14, 2009	84	2009
Ensemble-based wrapper methods for feature selection and class imbalance learning P Yang, W Liu, BB Zhou, S Chawla, AY Zomaya Pacific-Asia conference on knowledge discovery and data mining, 544-555, 2013	83	2013
scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets Y Lin, S Ghazanfar, KYX Wang, ..., TP Speed, P Yang@, JYH Yang@ Proceedings of the National Academy of Sciences 116 (20), 9775-9784, 2019	82	2019
Ensemble deep learning in bioinformatics Y Cao, TA Geddes, JYH Yang, P Yang@ Nature Machine Intelligence 2 (9), 500-508, 2020	74	2020
An integrative systems genetic analysis of mammalian lipid metabolism BL Parker, AC Calkin, MM Seldin, MF Keating, EJ Tarling, P Yang, ... Nature 567 (7747), 187-193, 2019	74	2019
mTORC1 is a major regulatory node in the FGF21 signaling network in adipocytes AY Minard, SX Tan, P Yang, DJ Fazakerley, W Domanova, BL Parker, ... Cell reports 17 (1), 29-36, 2016	74	2016
Multi-omic profiling reveals dynamics of the phased progression of pluripotency P Yang, SJ Humphrey, S Cinghu, R Pathania, AJ Oldfield, D Kumar, ... Cell systems 8 (5), 427-445. e10, 2019	69	2019
Impact of similarity metrics on single-cell RNA-seq data clustering T Kim, IR Chen, Y Lin, AYY Wang, JYH Yang, P Yang@ Briefings in bioinformatics 20 (6), 2316-2326, 2019	68	2019
Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance DJ Fazakerley, R Chaudhuri, P Yang, GJ Maghzal, KC Thomas, JR Krycer, ... Elife 7, e32111, 2018	68	2018
Sample subset optimization techniques for imbalanced and ensemble learning problems in bioinformatics applications P Yang, PD Yoo, J Fernando, BB Zhou, Z Zhang, AY Zomaya IEEE transactions on cybernetics 44 (3), 445-455, 2014	67	2014
Intragenic enhancers attenuate host gene expression S Cinghu, P Yang, JP Kosak, AE Conway, D Kumar, AJ Oldfield, ... Molecular cell 68 (1), 104-117. e6, 2017	62	2017
Gene-gene interaction filtering with ensemble of filters P Yang, JWK Ho, YH Yang, BB Zhou BMC bioinformatics 12 (1), 1-10, 2011	49	2011
Global redox proteome and phosphoproteome analysis reveals redox switch in Akt Z Su, J Burchfield, P Yang*, S Humphrey, G Yang, D Francis, S Yasmin, ... Nature Communications 10, 2019	42	2019

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