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Patrik D'haeseleer
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Year
Deep-sea oil plume enriches indigenous oil-degrading bacteria
TC Hazen, EA Dubinsky, TZ DeSantis, GL Andersen, YM Piceno, N Singh, ...
Science 330 (6001), 204-208, 2010
13892010
Genetic network inference: from co-expression clustering to reverse engineering
P D’haeseleer, S Liang, R Somogyi
Bioinformatics 16 (8), 707-726, 2000
13232000
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ...
Nature 462 (7276), 1056-1060, 2009
10842009
Linear modeling of mRNA expression levels during CNS development and injury
P D'haeseleer, X Wen, S Fuhrman, R Somogyi
Pacific Symposium on Biocomputing '99, 41-52, 1999
7641999
An immunological approach to change detection: Algorithms, analysis and implications
P D'haeseleer, S Forrest, P Helman
Proceedings 1996 IEEE Symposium on Security and Privacy, 110-119, 1996
747*1996
How does gene expression clustering work?
P D'haeseleer
Nature biotechnology 23 (12), 1499-1501, 2005
6982005
What are DNA sequence motifs?
P D'haeseleer
Nature biotechnology 24 (4), 423-425, 2006
4512006
Automated modelling of signal transduction networks
M Steffen, A Petti, J Aach, P D'haeseleer, G Church
BMC bioinformatics 3, 1-11, 2002
3102002
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume
Z Lu, Y Deng, JD Van Nostrand, Z He, J Voordeckers, A Zhou, YJ Lee, ...
The ISME Journal 6 (2), 451-460, 2011
3062011
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community
M Allgaier, A Reddy, JI Park, N Ivanova, P D'haeseleer, S Lowry, R Sapra, ...
Plos one 5 (1), e8812, 2010
2032010
How does DNA sequence motif discovery work?
P D'haeseleer
Nature biotechnology 24 (8), 959-961, 2006
1752006
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
Nucleic acids research 49 (D1), D575-D588, 2021
1722021
Context preserving crossover in genetic programming
P D'haeseleer
Proceedings of the First IEEE Conference on Evolutionary Computation. IEEE …, 1994
1691994
Mining the gene expression matrix: inferring gene relationships from large scale gene expression data
P D’haeseleer, X Wen, S Fuhrman, R Somogyi
Information processing in cells and tissues, 203-212, 1998
1471998
A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels
JI Park, EJ Steen, H Burd, SS Evans, AM Redding-Johnson, T Batth, ...
PloS one 7 (5), e37010, 2012
1462012
An Immunological Approach to Change Detection: Theoretical Results
P D'haeseleer
Proceedings 9th IEEE Computer Security Foundations Workshop, 18-26, 1996
1431996
Complete genome sequence of Kytococcus sedentarius type strain (541T)
D Sims, T Brettin, JC Detter, C Han, A Lapidus, A Copeland, TG Del Rio, ...
Standards in Genomic Sciences 1, 12-21, 2009
1292009
Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities
KM DeAngelis, JM Gladden, M Allgaier, P D’haeseleer, JL Fortney, ...
Bioenergy Research 3, 146-158, 2010
1182010
Reconstructing gene networks from large scale gene expression data
P D'haeseleer
The University of New Mexico, 2000
1102000
Gene expression data analysis and modeling
P D’haeseleer, S Liang, R Somogyi
Pacific symposium on biocomputing 99, 1999
1011999
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