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Aditya Bhagwate
Aditya Bhagwate
Informatics Specialist II , Mayo Clinic, Rochester, MN
Verified email at mayo.edu
Title
Cited by
Cited by
Year
CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data
Z Sun, J Evans, A Bhagwate, S Middha, M Bockol, H Yan, JP Kocher
BMC genomics 15, 1-10, 2014
1772014
Use of FFPE-derived DNA in next generation sequencing: DNA extraction methods
SJ McDonough, A Bhagwate, Z Sun, C Wang, M Zschunke, JA Gorman, ...
PloS one 14 (4), e0211400, 2019
882019
Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations
Z Sun, A Bhagwate, N Prodduturi, P Yang, JPA Kocher
Briefings in bioinformatics 18 (6), 973-983, 2017
672017
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data
H Yan, J Evans, M Kalmbach, R Moore, S Middha, S Luban, L Wang, ...
BMC bioinformatics 15, 1-12, 2014
662014
Gene expression, single nucleotide variant and fusion transcript discovery in archival material from breast tumors
N Norton, Z Sun, YW Asmann, DJ Serie, BM Necela, A Bhagwate, J Jen, ...
PloS one 8 (11), e81925, 2013
652013
DNA methylation profiling: comparison of genome-wide sequencing methods and the Infinium Human Methylation 450 Bead Chip
DL Walker, AV Bhagwate, S Baheti, RL Smalley, CA Hilker, Z Sun, ...
Epigenomics 7 (8), 1287-1302, 2015
642015
RVboost: RNA-seq variants prioritization using a boosting method
C Wang, JI Davila, S Baheti, AV Bhagwate, X Wang, JPA Kocher, ...
Bioinformatics 30 (23), 3414-3416, 2014
512014
PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data
C Wang, JM Evans, AV Bhagwate, N Prodduturi, V Sarangi, M Middha, ...
Bioinformatics 30 (18), 2678-2680, 2014
502014
Bioinformatics and DNA-extraction strategies to reliably detect genetic variants from FFPE breast tissue samples
AV Bhagwate, Y Liu, SJ Winham, SJ McDonough, ML Stallings-Mann, ...
BMC genomics 20, 1-10, 2019
462019
Dysfunctional ERG signaling drives pulmonary vascular aging and persistent fibrosis
N Caporarello, J Lee, TX Pham, DL Jones, J Guan, PA Link, JA Meridew, ...
Nature communications 13 (1), 4170, 2022
272022
Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol
Z Sun, YW Asmann, A Nair, Y Zhang, L Wang, KR Kalari, AV Bhagwate, ...
PloS one 8 (8), e71745, 2013
272013
High frequency electrical stimulation promotes expression of extracellular matrix proteins from human astrocytes
JS Jang, CI Choi, J Yi, K Butters, I Kim, A Bhagwate, J Jen, S Chang
Molecular biology reports 46, 4369-4375, 2019
132019
Comparative evaluation of cDNA library construction approaches for RNA-Seq analysis from low RNA-content human specimens
TL Masters, CA Hilker, PR Jeraldo, AV Bhagwate, ...
Journal of microbiological methods 154, 55-62, 2018
122018
In vivo lentiviral vector gene therapy to cure hereditary tyrosinemia type 1 and prevent development of precancerous and cancerous lesions
CT Nicolas, CJ VanLith, RD Hickey, Z Du, LG Hillin, RM Guthman, ...
Nature communications 13 (1), 5012, 2022
102022
Ex vivo cell therapy by ectopic hepatocyte transplantation treats the porcine tyrosinemia model of acute liver failure
CT Nicolas, RA Kaiser, RD Hickey, KL Allen, Z Du, CJ VanLith, ...
Molecular Therapy-Methods & Clinical Development 18, 738-750, 2020
102020
Indel sensitive and comprehensive variant/mutation detection from RNA sequencing data for precision medicine
N Prodduturi, A Bhagwate, JPA Kocher, Z Sun
BMC medical genomics 11, 53-62, 2018
92018
Human transcriptomic response to periprosthetic joint infection
TL Masters, AV Bhagwate, MK Dehankar, KE Greenwood-Quaintance, ...
Gene 825, 146400, 2022
82022
Identification of factors associated with duplicate rate in ChIP-seq data
S Tian, S Peng, M Kalmbach, KS Gaonkar, A Bhagwate, W Ding, ...
PloS one 14 (4), e0214723, 2019
72019
Sonicate fluid cellularity predicted by transcriptomic deconvolution differentiates infectious from non-infectious arthroplasty failure
CR Fisher, JE Krull, A Bhagwate, T Masters, KE Greenwood-Quaintance, ...
JBJS 105 (1), 63-73, 2023
62023
Epigenetic alterations are associated with gastric emptying disturbances in diabetes mellitus
SP Narayanan, JH Lee, A Bhagwate, S Kuwelker, H Yan, T Ordog, ...
Clinical and translational gastroenterology 11 (3), e00136, 2020
62020
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Articles 1–20