Illuminating protein space with a programmable generative model JB Ingraham, M Baranov, Z Costello, KW Barber, W Wang, A Ismail, ... Nature 623 (7989), 1070-1078, 2023 | 261 | 2023 |
ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability V Frappier, M Chartier, RJ Najmanovich Nucleic acids research 43 (W1), W395-W400, 2015 | 179 | 2015 |
A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations V Frappier, RJ Najmanovich PLoS computational biology 10 (4), e1003569, 2014 | 112 | 2014 |
Chester: A web delivered locally computed chest x-ray disease prediction system JP Cohen, P Bertin, V Frappier arXiv preprint arXiv:1901.11210, 2019 | 70 | 2019 |
Data-driven computational protein design V Frappier, AE Keating Current Opinion in Structural Biology 69, 63-69, 2021 | 47 | 2021 |
Tertiary structural motif sequence statistics enable facile prediction and design of peptides that bind anti-apoptotic Bfl-1 and Mcl-1 V Frappier, JM Jenson, J Zhou, G Grigoryan, AE Keating Structure 27 (4), 606-617. e5, 2019 | 43 | 2019 |
StAR-related lipid transfer domain protein 5 binds primary bile acids [S] D Létourneau, A Lorin, A Lefebvre, V Frappier, F Gaudreault, ... Journal of Lipid Research 53 (12), 2677-2689, 2012 | 42 | 2012 |
PixelDB: Protein–peptide complexes annotated with structural conservation of the peptide binding mode V Frappier, M Duran, AE Keating Protein Science 27 (1), 276-285, 2018 | 30 | 2018 |
Vibrational entropy differences between mesophile and thermophile proteins and their use in protein engineering V Frappier, R Najmanovich Protein Science 24 (4), 474-483, 2015 | 29 | 2015 |
The mode of action of recombinant Mycobacterium tuberculosis shikimate kinase: kinetics and thermodynamics analyses LA Rosado, IB Vasconcelos, MS Palma, V Frappier, RJ Najmanovich, ... PLoS One 8 (5), e61918, 2013 | 25 | 2013 |
New structural determinants for c‐Myc specific heterodimerization with Max and development of a novel homodimeric c‐Myc b‐HLH‐LZ ME Beaulieu, FO McDuff, V Frappier, M Montagne, JF Naud, P Lavigne Journal of Molecular Recognition 25 (7), 414-426, 2012 | 21 | 2012 |
Mutations that allow SIR2 orthologs to function in a NAD+-depleted environment CR Ondracek, V Frappier, AE Ringel, C Wolberger, L Guarente Cell reports 18 (10), 2310-2319, 2017 | 11 | 2017 |
Chester: A web delivered locally computed chest X-ray disease prediction system. arXiv 2019 JP Cohen, P Bertin, V Frappier arXiv preprint arXiv:1901.11210, 2020 | 10 | 2020 |
Applications of normal mode analysis methods in computational protein design V Frappier, M Chartier, R Najmanovich Computational Protein Design, 203-214, 2017 | 9 | 2017 |
Chester: a web delivered locally computed chest X-ray disease prediction system. 2019 JP Cohen, P Bertin, V Frappier arXiv preprint arXiv:1901.11210, 1901 | 9 | 1901 |
Illuminating protein space with a programmable generative model. bioRxiv 2022 J Ingraham, M Baranov, Z Costello, KW Barber, W Wang, A Ismail, ... CrossRef][PubMed], 2022 | 7 | 2022 |
Analysis of gene interaction graphs as prior knowledge for machine learning models P Bertin, M Hashir, M Weiss, V Frappier, TJ Perkins, G Boucher, JP Cohen arXiv preprint arXiv:1905.02295, 2019 | 5 | 2019 |
A web delivered locally computed chest X-ray disease prediction system JP Cohen, P Bertin, V Frappier Chester: A Web Delivered Locally Computed Chest X-Ray Disease Prediction System, 2019 | 5 | 2019 |
Analysis of gene interaction graphs for biasing machine learning models P Bertin, M Hashir, M Weiss, G Boucher, V Frappier, JP Cohen arXiv: Genomics, 2019 | 5 | 2019 |
Chester: a web delivered locally computed chest x-ray disease prediction system. arxiv JP Cohen, P Bertin, V Frappier | 5 | 1901 |