Emmanouil (Manolis) Maragkakis
Emmanouil (Manolis) Maragkakis
Stadtman Tenure-Track Investigator, National Institute on Aging, NIH
Η διεύθυνση ηλεκτρονικού ταχυδρομείου έχει επαληθευτεί στον τομέα nih.gov - Αρχική σελίδα
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DIANA-microT web server: elucidating microRNA functions through target prediction
M Maragkakis, M Reczko, VA Simossis, P Alexiou, GL Papadopoulos, ...
Nucleic acids research 37 (suppl_2), W273-W276, 2009
6072009
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
T Vergoulis, IS Vlachos, P Alexiou, G Georgakilas, M Maragkakis, ...
Nucleic acids research 40 (D1), D222-D229, 2011
5562011
DIANA miRPath v. 2.0: investigating the combinatorial effect of microRNAs in pathways
IS Vlachos, N Kostoulas, T Vergoulis, G Georgakilas, M Reczko, ...
Nucleic acids research 40 (W1), W498-W504, 2012
4852012
Accurate microRNA target prediction correlates with protein repression levels
M Maragkakis, P Alexiou, GL Papadopoulos, M Reczko, T Dalamagas, ...
BMC bioinformatics 10 (1), 295, 2009
3882009
Functional microRNA targets in protein coding sequences
M Reczko, M Maragkakis, P Alexiou, I Grosse, AG Hatzigeorgiou
Bioinformatics 28 (6), 771-776, 2012
3802012
Lost in translation: an assessment and perspective for computational microRNA target identification
P Alexiou, M Maragkakis, GL Papadopoulos, M Reczko, ...
Bioinformatics 25 (23), 3049-3055, 2009
3702009
DIANA-mirPath: Integrating human and mouse microRNAs in pathways
GL Papadopoulos, P Alexiou, M Maragkakis, M Reczko, ...
Bioinformatics 25 (15), 1991-1993, 2009
2902009
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs
MD Paraskevopoulou, G Georgakilas, N Kostoulas, M Reczko, ...
Nucleic acids research 41 (D1), D239-D245, 2012
2572012
Editing of Epstein-Barr virus-encoded BART6 microRNAs controls their dicer targeting and consequently affects viral latency
H Iizasa, BE Wulff, NR Alla, M Maragkakis, M Megraw, A Hatzigeorgiou, ...
Journal of Biological Chemistry 285 (43), 33358-33370, 2010
2172010
Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis
A Vourekas, Q Zheng, P Alexiou, M Maragkakis, Y Kirino, BD Gregory, ...
Nature structural & molecular biology 19 (8), 773, 2012
1762012
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association
M Maragkakis, T Vergoulis, P Alexiou, M Reczko, K Plomaritou, M Gousis, ...
Nucleic acids research 39 (suppl_2), W145-W148, 2011
1342011
The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing
A Vourekas, K Zheng, Q Fu, M Maragkakis, P Alexiou, J Ma, RS Pillai, ...
Genes & development 29 (6), 617-629, 2015
882015
FUS regulates genes coding for RNA-binding proteins in neurons by binding to their highly conserved introns
T Nakaya, P Alexiou, M Maragkakis, A Chang, Z Mourelatos
Rna 19 (4), 498-509, 2013
872013
The DIANA-mirExTra web server: from gene expression data to microRNA function
P Alexiou, M Maragkakis, GL Papadopoulos, VA Simmosis, L Zhang, ...
PloS one 5 (2), 2010
812010
Mitochondrial protein BmPAPI modulates the length of mature piRNAs
S Honda, Y Kirino, M Maragkakis, P Alexiou, A Ohtaki, R Murali, ...
Rna 19 (10), 1405-1418, 2013
742013
A microRNA precursor surveillance system in quality control of microRNA synthesis
X Liu, Q Zheng, N Vrettos, M Maragkakis, P Alexiou, BD Gregory, ...
Molecular cell 55 (6), 868-879, 2014
672014
Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm
A Vourekas, P Alexiou, N Vrettos, M Maragkakis, Z Mourelatos
Nature 531 (7594), 390-394, 2016
662016
Accurate microRNA target prediction using detailed binding site accessibility and machine learning on proteomics data
M Reczko, M Maragkakis, P Alexiou, GL Papadopoulos, ...
Frontiers in genetics 2, 103, 2012
392012
Identification of in vivo, conserved, TAF15 RNA binding sites reveals the impact of TAF15 on the neuronal transcriptome
F Ibrahim, M Maragkakis, P Alexiou, MA Maronski, MA Dichter, ...
Cell reports 3 (2), 301-308, 2013
282013
CLIPSeqTools—a novel bioinformatics CLIP-seq analysis suite
M Maragkakis, P Alexiou, T Nakaya, Z Mourelatos
RNA 22 (1), 1-9, 2016
222016
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