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Bill Andreopoulos
Bill Andreopoulos
Data scientist, DOE Joint Genome Institute, Lawrence Berkeley National Lab
Verified email at lbl.gov
Title
Cited by
Cited by
Year
Data classification
CC Aggarwal
Data mining, 285-344, 2015
24672015
A roadmap of clustering algorithms: finding a match for a biomedical application
B Andreopoulos, A An, X Wang, M Schroeder
Briefings in bioinformatics 10 (3), 297-314, 2009
2842009
Widespread adenine N6-methylation of active genes in fungi
SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ...
Nature genetics 49 (6), 964-968, 2017
2162017
Unraveling protein networks with power graph analysis
L Royer, M Reimann, B Andreopoulos, M Schroeder
PLoS computational biology 4 (7), e1000108, 2008
1702008
Megaphylogeny resolves global patterns of mushroom evolution
T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ...
Nature Ecology & Evolution 3 (4), 668-678, 2019
1252019
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 1-17, 2020
1042020
101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ...
Studies in mycology 95 (1), 5-169, 2020
842020
Next generation sequencing data of a defined microbial mock community
E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ...
Scientific data 3 (1), 1-8, 2016
772016
Leveraging single-cell genomics to expand the fungal tree of life
SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ...
Nature microbiology 3 (12), 1417-1428, 2018
742018
Phage-specific metabolic reprogramming of virocells
C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ...
The ISME journal 14 (4), 881-895, 2020
622020
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ...
BMC bioinformatics 10 (1), 1-15, 2009
512009
Clustering large software systems at multiple layers
B Andreopoulos, A An, V Tzerpos, X Wang
Information and Software Technology 49 (3), 244-254, 2007
442007
Clustering by common friends finds locally significant proteins mediating modules
B Andreopoulos, A An, X Wang, M Faloutsos, M Schroeder
Bioinformatics 23 (9), 1124-1131, 2007
392007
Hierarchical density-based clustering of categorical data and a simplification
B Andreopoulos, A An, X Wang
Pacific-Asia Conference on Knowledge Discovery and Data Mining, 11-22, 2007
352007
Genomic analysis enlightens Agaricales lifestyle evolution and increasing peroxidase diversity
FJ Ruiz-Dueñas, JM Barrasa, M Sánchez-García, S Camarero, ...
Molecular biology and evolution 38 (4), 1428-1446, 2021
332021
Word sense disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering
B Andreopoulos, D Alexopoulou, M Schroeder
International journal of data mining and bioinformatics 2 (3), 193-215, 2008
322008
Bi-level clustering of mixed categorical and numerical biomedical data
B Andreopoulos, A An, X Wang
International Journal of Data Mining and Bioinformatics 1 (1), 19-56, 2006
322006
Gopubmed: Exploring pubmed with ontological background knowledge
H Dietze, D Alexopoulou, MR Alvers, L Barrio-Alvers, B Andreopoulos, ...
Bioinformatics for Systems Biology, 385-399, 2009
312009
Integrated analysis reveals hsa-miR-142 as a representative of a lymphocyte-specific gene expression and methylation signature
B Andreopoulos, D Anastassiou
Cancer informatics 11, CIN. S9037, 2012
292012
Multiple layer clustering of large software systems
B Andreopoulos, A An, V Tzerpos, X Wang
12th Working Conference on Reverse Engineering (WCRE'05), 10 pp.-88, 2005
292005
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