| Data classification CC Aggarwal, CC Aggarwal Data Mining: The Textbook, 285-344, 2015 | 3168 | 2015 |
| A roadmap of clustering algorithms: finding a match for a biomedical application B Andreopoulos, A An, X Wang, M Schroeder Briefings in bioinformatics 10 (3), 297-314, 2009 | 322 | 2009 |
| Widespread adenine N6-methylation of active genes in fungi SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ... Nature genetics 49 (6), 964-968, 2017 | 302 | 2017 |
| Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ... Nature communications 11 (1), 5125, 2020 | 293 | 2020 |
| Megaphylogeny resolves global patterns of mushroom evolution T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ... Nature Ecology & Evolution 3 (4), 668-678, 2019 | 221 | 2019 |
| Unraveling protein networks with power graph analysis L Royer, M Reimann, B Andreopoulos, M Schroeder PLoS computational biology 4 (7), e1000108, 2008 | 180 | 2008 |
| 101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ... Studies in mycology 96 (1), 141-153, 2020 | 172 | 2020 |
| Phage-specific metabolic reprogramming of virocells C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ... The ISME journal 14 (4), 881-895, 2020 | 149 | 2020 |
| Leveraging single-cell genomics to expand the fungal tree of life SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ... Nature Microbiology 3 (12), 1417-1428, 2018 | 111 | 2018 |
| Next generation sequencing data of a defined microbial mock community E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ... Scientific data 3 (1), 1-8, 2016 | 101 | 2016 |
| Genomic analysis enlightens Agaricales lifestyle evolution and increasing peroxidase diversity FJ Ruiz-Dueñas, JM Barrasa, M Sánchez-García, S Camarero, ... Molecular biology and evolution 38 (4), 1428-1446, 2021 | 75 | 2021 |
| Genetic determinants of endophytism in the Arabidopsis root mycobiome F Mesny, S Miyauchi, T Thiergart, B Pickel, L Atanasova, M Karlsson, ... Nature communications 12 (1), 7227, 2021 | 67 | 2021 |
| Convolutional neural networks and extreme learning machines for malware classification M Jain, W Andreopoulos, M Stamp Journal of Computer Virology and Hacking Techniques 16, 229-244, 2020 | 54 | 2020 |
| Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ... BMC bioinformatics 10, 1-15, 2009 | 51 | 2009 |
| Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613 H Park, B Min, Y Jang, J Kim, A Lipzen, A Sharma, B Andreopoulos, ... Applied microbiology and biotechnology 103, 8145-8155, 2019 | 48 | 2019 |
| Clustering large software systems at multiple layers B Andreopoulos, A An, V Tzerpos, X Wang Information and Software Technology 49 (3), 244-254, 2007 | 45 | 2007 |
| Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi LA Lofgren, NH Nguyen, R Vilgalys, J Ruytinx, HL Liao, S Branco, A Kuo, ... New Phytologist 230 (2), 774-792, 2021 | 42 | 2021 |
| Clustering by common friends finds locally significant proteins mediating modules B Andreopoulos, A An, X Wang, M Faloutsos, M Schroeder Bioinformatics 23 (9), 1124-1131, 2007 | 39 | 2007 |
| The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins AM Geller, I Pollin, D Zlotkin, A Danov, N Nachmias, WB Andreopoulos, ... Nature communications 12 (1), 3743, 2021 | 36 | 2021 |
| Hierarchical density-based clustering of categorical data and a simplification B Andreopoulos, A An, X Wang Advances in Knowledge Discovery and Data Mining: 11th Pacific-Asia …, 2007 | 35 | 2007 |
