| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 189 | 2022 |
| MetaPheno: a critical evaluation of deep learning and machine learning in metagenome-based disease prediction N LaPierre, CJT Ju, G Zhou, W Wang Methods 166, 74-82, 2019 | 105 | 2019 |
| Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples JS Bloom, L Sathe, C Munugala, EM Jones, M Gasperini, NB Lubock, ... Nature Biomedical Engineering 5 (7), 657-665, 2021 | 101* | 2021 |
| Metalign: efficient alignment-based metagenomic profiling via containment min hash N LaPierre, M Alser, E Eskin, D Koslicki, S Mangul Genome biology 21, 1-15, 2020 | 52 | 2020 |
| Identifying causal variants by fine mapping across multiple studies N LaPierre, K Taraszka, H Huang, R He, F Hormozdiari, E Eskin PLoS genetics 17 (9), e1009733, 2021 | 42 | 2021 |
| MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples N LaPierre, S Mangul, M Alser, I Mandric, NC Wu, D Koslicki, E Eskin BMC genomics 20, 1-10, 2019 | 34 | 2019 |
| De novo Nanopore read quality improvement using deep learning N LaPierre, R Egan, W Wang, Z Wang BMC bioinformatics 20, 1-9, 2019 | 16* | 2019 |
| Robust Mendelian randomization in the presence of residual population stratification, batch effects and horizontal pleiotropy C Cinelli, N LaPierre, BL Hill, S Sankararaman, E Eskin Nature communications 13 (1), 1093, 2022 | 14 | 2022 |
| Sina Booeshaghi JS Bloom, L Sathe, C Munugala, EM Jones, M Gasperini, NB Lubock, ... Brandenberg OF, 657-665, 2021 | 14 | 2021 |
| Ensemble neural network model for detecting thyroid eye disease using external photographs J Karlin, L Gai, N LaPierre, K Danesh, J Farajzadeh, B Palileo, K Taraszka, ... British Journal of Ophthalmology 107 (11), 1722-1729, 2023 | 12 | 2023 |
| Metagenome sequence clustering with hash-based canopies MA Rahman, N LaPierre, H Rangwala, D Barbara Journal of bioinformatics and computational biology 15 (06), 1740006, 2017 | 6 | 2017 |
| Phenotype prediction from metagenomic data using clustering and assembly with multiple instance learning (CAMIL) MA Rahman, N LaPierre, H Rangwala IEEE/ACM transactions on computational biology and bioinformatics 17 (3 …, 2017 | 6 | 2017 |
| CAMIL: Clustering and Assembly with Multiple Instance Learning for phenotype prediction N LaPierre, MA Rahman, H Rangwala 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016 | 6 | 2016 |
| Genetic pathways regulating the longitudinal acquisition of cocaine self-administration in a panel of inbred and recombinant inbred mice AH Khan, JR Bagley, N LaPierre, C Gonzalez-Figueroa, TC Spencer, ... Cell reports 42 (8), 2023 | 3 | 2023 |
| Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing (preprint) JS Bloom, EM Jones, M Gasperini, NB Lubock, L Sathe, C Munugala, ... | 1 | 2020 |
| Clustering Metagenome Sequences Using Canopies MA Rahman, N LaPierre, H Rangwala, D Barbara Proc. 9th Int. Conf. Bioinf. Comput. Biol. 1, 1-8, 2017 | 1 | 2017 |
| Packaging and containerization of computational methods M Alser, B Lawlor, RJ Abdill, S Waymost, R Ayyala, N Rajkumar, ... Nature Protocols, 1-11, 2024 | | 2024 |
| Accounting for isoform expression increases power to identify genetic regulation of gene expression N LaPierre, H Pimentel PLOS Computational Biology 20 (2), e1011857, 2024 | | 2024 |
| Complementation testing identifies causal genes at quantitative trait loci underlying fear related behavior PB Chen, R Chen, NRS LaPierre, Z Chen, J Mefford, E Marcus, M Heffel, ... bioRxiv, 2024.01. 03.574060, 2024 | | 2024 |
| Leveraging family data to design Mendelian randomization that is provably robust to population stratification N LaPierre, B Fu, S Turnbull, E Eskin, S Sankararaman Genome Research 33 (7), 1032-1041, 2023 | | 2023 |
Eleazar EskinUniversity of California, Los AngelesVerified email at cs.ucla.edu
