| Constraint-based models predict metabolic and associated cellular functions A Bordbar, JM Monk, ZA King, BO Palsson Nature Reviews Genetics 15 (2), 107-120, 2014 | 669 | 2014 |
| BiGG Models: A platform for integrating, standardizing and sharing genome-scale models ZA King, J Lu, A Dräger, P Miller, S Federowicz, JA Lerman, A Ebrahim, ... Nucleic acids research 44 (D1), D515-D522, 2016 | 504 | 2016 |
| In vitro and in vivo evaluation of PEDOT microelectrodes for neural stimulation and recording S Venkatraman, J Hendricks, ZA King, AJ Sereno, S Richardson-Burns, ... IEEE Transactions on Neural Systems and Rehabilitation Engineering 19 (3 …, 2011 | 217 | 2011 |
| Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways ZA King, A Dräger, A Ebrahim, N Sonnenschein, NE Lewis, BO Palsson PLoS Comput Biol 11 (8), e1004321, 2015 | 214 | 2015 |
| iML1515, a knowledgebase that computes Escherichia coli traits JM Monk, CJ Lloyd, E Brunk, N Mih, A Sastry, Z King, R Takeuchi, ... Nature biotechnology 35 (10), 904-908, 2017 | 204 | 2017 |
| The morphology of poly (3, 4-ethylenedioxythiophene) DC Martin, J Wu, CM Shaw, Z King, SA Spanninga, S Richardson-Burns, ... Polymer Reviews 50 (3), 340-384, 2010 | 173 | 2010 |
| Next-generation genome-scale models for metabolic engineering ZA King, CJ Lloyd, AM Feist, BO Palsson Current opinion in biotechnology 35, 23-29, 2015 | 168 | 2015 |
| A consensus genome-scale reconstruction of Chinese hamster ovary cell metabolism H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ... Cell Systems 3 (5), 434-443. e8, 2016 | 148 | 2016 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 116* | 2020 |
| Structural, chemical and electrochemical characterization of poly (3, 4-Ethylenedioxythiophene)(PEDOT) prepared with various counter-ions and heat treatments ZA King, CM Shaw, SA Spanninga, DC Martin Polymer 52 (5), 1302-1308, 2011 | 87 | 2011 |
| COBRAme: A computational framework for genome-scale models of metabolism and gene expression CJ Lloyd, A Ebrahim, L Yang, ZA King, E Catoiu, EJ O’Brien, JK Liu, ... PLoS computational biology 14 (7), e1006302, 2018 | 81* | 2018 |
| A model‐driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in E. coli K‐12 MG1655 that is biochemically and thermodynamically … D McCloskey, JA Gangoiti, ZA King, RK Naviaux, BA Barshop, ... Biotechnology and bioengineering 111 (4), 803-815, 2014 | 60 | 2014 |
| Co-electrodeposited hydrogel-conducting polymer electrodes for biomedical applications S Richardson-Burns, JL Hendricks, DC Martin, A Sereno, Z King, E Jan US Patent 9,084,546, 2015 | 54 | 2015 |
| The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function S Ghatak, ZA King, A Sastry, BO Palsson Nucleic acids research 47 (5), 2446-2454, 2019 | 52 | 2019 |
| BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree CJ Norsigian, N Pusarla, JL McConn, JT Yurkovich, A Dräger, BO Palsson, ... Nucleic acids research 48 (D1), D402-D406, 2020 | 46 | 2020 |
| The Escherichia coli transcriptome mostly consists of independently regulated modules AV Sastry, Y Gao, R Szubin, Y Hefner, S Xu, D Kim, KS Choudhary, ... Nature communications 10 (1), 1-14, 2019 | 40 | 2019 |
| Optimal cofactor swapping can increase the theoretical yield for chemical production in Escherichia coli and Saccharomyces cerevisiae ZA King, AM Feist Metabolic engineering 24, 117-128, 2014 | 36 | 2014 |
| Optimizing cofactor specificity of oxidoreductase enzymes for the generation of microbial production strains—OptSwap ZA King, AM Feist Industrial Biotechnology 9 (4), 236-246, 2013 | 36 | 2013 |
| BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data JC Lachance, CJ Lloyd, JM Monk, L Yang, AV Sastry, Y Seif, BO Palsson, ... PLoS computational biology 15 (4), e1006971, 2019 | 33* | 2019 |
| Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion ZA King, EJ O'Brien, AM Feist, BO Palsson Metabolic Engineering 39, 220–227, 2017 | 29 | 2017 |
Bernhard PalssonUCSDVerified email at eng.ucsd.edu
