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Xiaotao Wang
Xiaotao Wang
Verified email at fudan.edu.cn - Homepage
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Year
A supervised learning framework for chromatin loop detection in genome-wide contact maps
TJ Salameh, X Wang, F Song, B Zhang, SM Wright, C Khunsriraksakul, ...
Nature communications 11 (1), 3428, 2020
972020
Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes
X Wang, J Xu, B Zhang, Y Hou, F Song, H Lyu, F Yue
Nature methods 18 (6), 661-668, 2021
942021
HP1 is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics
AR Strom, RJ Biggs, EJ Banigan, X Wang, K Chiu, C Herman, J Collado, ...
Elife 10, e63972, 2021
882021
A map of cis-regulatory elements and 3D genome structures in zebrafish
H Yang, Y Luan, T Liu, HJ Lee, L Fang, Y Wang, X Wang, B Zhang, Q Jin, ...
Nature 588 (7837), 337-343, 2020
872020
HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions
XT Wang, W Cui, C Peng
Nucleic acids research 45 (19), e163-e163, 2017
812017
EagleC: A deep-learning framework for detecting a full range of structural variations from bulk and single-cell contact maps
X Wang, Y Luan, F Yue
Science Advances 8 (24), eabn9215, 2022
752022
The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling
C Peng, LY Fu, PF Dong, ZL Deng, JX Li, XT Wang, HY Zhang
Nucleic acids research 41 (19), e183-e183, 2013
682013
Biased gene retention during diploidization in Brassica linked to three-dimensional genome organization
T Xie, FG Zhang, HY Zhang, XT Wang, JH Hu, XM Wu
Nature plants 5 (8), 822-832, 2019
582019
Fast alignment and preprocessing of chromatin profiles with Chromap
H Zhang, L Song, X Wang, H Cheng, C Wang, CA Meyer, T Liu, M Tang, ...
Nature communications 12 (1), 6566, 2021
572021
Spatial colocalization of human ohnolog pairs acts to maintain dosage-balance
T Xie, QY Yang, XT Wang, A McLysaght, HY Zhang
Molecular biology and evolution 33 (9), 2368-2375, 2016
372016
Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer
T Iyyanki, B Zhang, Q Wang, Y Hou, Q Jin, J Xu, H Yang, T Liu, X Wang, ...
Genome biology 22, 1-20, 2021
362021
Human fetal cerebellar cell atlas informs medulloblastoma origin and oncogenesis
Z Luo, M Xia, W Shi, C Zhao, J Wang, D Xin, X Dong, Y Xiong, F Zhang, ...
Nature 612 (7941), 787-794, 2022
262022
Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes
XT Wang, PF Dong, HY Zhang, C Peng
Nucleic acids research 43 (15), 7237-7246, 2015
262015
Influence of chromatin 3D organization on structural variations of the Arabidopsis thaliana genome
JF Tao, JZ Zhou, T Xie, XT Wang, QY Yang, HY Zhang
Molecular Plant 10 (2), 340-344, 2017
52017
HiCLift: a fast and efficient tool for converting chromatin interaction data between genome assemblies
X Wang, F Yue
Bioinformatics 39 (6), btad389, 2023
12023
Subtype-specific and structure variation induced 3D genome alteration in acute myeloid leukemia
J Xu, F Song, B Zhang, H Lyu, M Kobayashi, Z Zhao, Y Hou, X Wang, ...
Cancer Research 82 (12_Supplement), 2953-2953, 2022
2022
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