Feichen Shen, PhD
Feichen Shen, PhD
Assistant Professor of Biomedical Informatics, Mayo Clinic Alix School of Medicine
Verified email at mayo.edu - Homepage
Title
Cited by
Cited by
Year
Clinical information extraction applications: a literature review
Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ...
Journal of biomedical informatics 77, 34-49, 2018
2632018
A comparison of word embeddings for the biomedical natural language processing
Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ...
Journal of biomedical informatics 87, 12-20, 2018
1472018
Deep phenotyping on electronic health records facilitates genetic diagnosis by clinical exomes
JH Son, G Xie, C Yuan, L Ena, Z Li, A Goldstein, L Huang, L Wang, ...
The American Journal of Human Genetics 103 (1), 58-73, 2018
392018
A clinical text classification paradigm using weak supervision and deep representation
Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu
BMC medical informatics and decision making 19 (1), 1, 2019
352019
Dependency and AMR embeddings for drug-drug interaction extraction from biomedical literature
Y Wang, S Liu, M Rastegar-Mojarad, L Wang, F Shen, F Liu, H Liu
Proceedings of the 8th acm international conference on bioinformatics …, 2017
312017
Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging Web ontology language (OWL) and cheminformatics approaches
Q Zhu, C Tao, F Shen, CG Chute
Biocomputing 2014, 172-182, 2014
312014
Knowledge discovery from biomedical ontologies in cross domains
F Shen, Y Lee
PloS one 11 (8), e0160005, 2016
282016
MedSTS: a resource for clinical semantic textual similarity
Y Wang, N Afzal, S Fu, L Wang, F Shen, M Rastegar-Mojarad, H Liu
Language Resources and Evaluation 54 (1), 57-72, 2020
272020
Smartspace: Multiagent based distributed platform for semantic service discovery
S Dasgupta, A Aroor, F Shen, Y Lee
IEEE Transactions on Systems, Man, and Cybernetics: Systems 44 (7), 805-821, 2013
222013
Leveraging collaborative filtering to accelerate rare disease diagnosis
F Shen, S Liu, Y Wang, L Wang, N Afzal, H Liu
AMIA Annual Symposium Proceedings 2017, 1554, 2017
212017
Phenotypic analysis of clinical narratives using human phenotype ontology
F Shen, L Wang, H Liu
Studies in health technology and informatics 245, 581, 2017
192017
Collaborative mobile-cloud computing for civil infrastructure condition inspection
ZQ Chen, J Chen, F Shen, Y Lee
Journal of Computing in Civil Engineering 29 (5), 04014066, 2015
192015
Integrating structured and unstructured EHR data using an FHIR-based type system: a case study with medication data
N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang
AMIA Summits on Translational Science Proceedings 2018, 74, 2018
172018
Predicate oriented pattern analysis for biomedical knowledge discovery
F Shen, H Liu, S Sohn, DW Larson, Y Lee
Intelligent information management 8 (3), 66, 2016
162016
BmQGen: Biomedical query generator for knowledge discovery
F Shen, H Liu, S Sohn, DW Larson, Y Lee
2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015
162015
Extracting chemical–protein relations using attention-based neural networks
S Liu, F Shen, R Komandur Elayavilli, Y Wang, M Rastegar-Mojarad, ...
Database 2018, 2018
152018
Rare disease knowledge enrichment through a data-driven approach
F Shen, Y Zhao, L Wang, MR Mojarad, Y Wang, S Liu, H Liu
BMC medical informatics and decision making 19 (1), 32, 2019
142019
Systematic identification of latent disease-gene associations from PubMed articles
Y Zhang, F Shen, MR Mojarad, D Li, S Liu, C Tao, Y Yu, H Liu
PloS one 13 (1), e0191568, 2018
142018
PEMAR: A pervasive middleware for activity recognition with smart phones
P Vaka, F Shen, M Chandrashekar, Y Lee
2015 IEEE International Conference on Pervasive Computing and Communication …, 2015
142015
HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology
F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu
Journal of biomedical informatics 96, 103246, 2019
122019
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Articles 1–20