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Anne-Ruxandra Carvunis
Anne-Ruxandra Carvunis
Verified email at pitt.edu - Homepage
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Cited by
Year
A proteome-scale map of the human interactome network
T Rolland, M Taşan, B Charloteaux, SJ Pevzner, Q Zhong, N Sahni, S Yi, ...
Cell 159 (5), 1212-1226, 2014
14622014
Evidence for Network Evolution in an Arabidopsis Interactome Map
Arabidopsis Interactome Mapping Consortium, M Dreze, AR Carvunis, ...
Science 333 (6042), 601-607, 2011
9552011
Independently evolved virulence effectors converge onto hubs in a plant immune system network
MS Mukhtar, AR Carvunis, M Dreze, P Epple, J Steinbrenner, J Moore, ...
science 333 (6042), 596-601, 2011
8932011
Proto-genes and de novo gene birth
AR Carvunis, T Rolland, I Wapinski, MA Calderwood, MA Yildirim, ...
Nature 487 (7407), 370-374, 2012
6322012
Integrative approaches for finding modular structure in biological networks
K Mitra, AR Carvunis, SK Ramesh, T Ideker
Nature Reviews Genetics 14 (10), 719-732, 2013
6062013
Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins
O Rozenblatt-Rosen, RC Deo, M Padi, G Adelmant, MA Calderwood, ...
Nature 487 (7408), 491-495, 2012
4172012
Literature-curated protein interaction datasets
ME Cusick, H Yu, A Smolyar, K Venkatesan, AR Carvunis, N Simonis, ...
Nature methods 6 (1), 39-46, 2009
3692009
Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans
D Dupuy, N Bertin, CA Hidalgo, K Venkatesan, D Tu, D Lee, J Rosenberg, ...
Nature biotechnology 25 (6), 663-668, 2007
3582007
Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
N Simonis, JF Rual, AR Carvunis, M Tasan, I Lemmens, ...
Nature methods 6 (1), 47-54, 2009
3402009
De novo gene birth
SB Van Oss, AR Carvunis
PLoS genetics 15 (5), e1008160, 2019
2562019
Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model
RL Feinbaum, JM Urbach, NT Liberati, S Djonovic, A Adonizio, ...
PLoS pathogens 8 (7), e1002813, 2012
1882012
Standardized annotation of translated open reading frames
JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ...
Nature biotechnology 40 (7), 994-999, 2022
125*2022
Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes
N Vakirlis, AR Carvunis, A McLysaght
elife 9, e53500, 2020
1152020
De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences
N Vakirlis, O Acar, B Hsu, N Castilho Coelho, SB Van Oss, A Wacholder, ...
Nature communications 11 (1), 781, 2020
1002020
Quantitative translation of dog-to-human aging by conserved remodeling of the DNA methylome
T Wang, J Ma, AN Hogan, S Fong, K Licon, B Tsui, JF Kreisberg, ...
Cell systems 11 (2), 176-185. e6, 2020
922020
No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution
T Domazet-Lošo, AR Carvunis, MM Albā, MS Šestak, R Bakarić, R Neme, ...
Molecular biology and evolution 34 (4), 843-856, 2017
872017
Mapping transcription factor interactome networks using HaloTag protein arrays
J Yazaki, M Galli, AY Kim, K Nito, F Aleman, KN Chang, AR Carvunis, ...
Proceedings of the National Academy of Sciences 113 (29), E4238-E4247, 2016
802016
The meanings of'function'in biology and the problematic case of de novo gene emergence
DM Keeling, P Garza, CM Nartey, AR Carvunis
Elife 8, e47014, 2019
622019
Evidence for a common evolutionary rate in metazoan transcriptional networks
AR Carvunis, T Wang, D Skola, A Yu, J Chen, JF Kreisberg, T Ideker
Elife 4, e11615, 2015
362015
Revisiting the Saccharomyces cerevisiae predicted ORFeome
QR Li, AR Carvunis, H Yu, JDJ Han, Q Zhong, N Simonis, S Tam, T Hao, ...
Genome research 18 (8), 1294-1303, 2008
362008
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