Robert J Schaefer, PhD
Robert J Schaefer, PhD
Data Scientist, Linkage Analytics
Verified email at - Homepage
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Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX
M Schubert, L Ermini, CD Sarkissian, H Jónsson, A Ginolhac, R Schaefer, ...
Nature protocols 9 (5), 1056-1082, 2014
Reshaping of the maize transcriptome by domestication
R Swanson-Wagner, R Briskine, R Schaefer, MB Hufford, J Ross-Ibarra, ...
Proceedings of the National Academy of Sciences 109 (29), 11878-11883, 2012
Integrating coexpression networks with GWAS to prioritize causal genes in maize
RJ Schaefer, JM Michno, J Jeffers, O Hoekenga, B Dilkes, I Baxter, ...
The Plant Cell 30 (12), 2922-2942, 2018
Developing a 670k genotyping array to tag~ 2M SNPs across 24 horse breeds
RJ Schaefer, M Schubert, E Bailey, DL Bannasch, E Barrey, GK Bar-Gal, ...
BMC genomics 18 (1), 1-18, 2017
Y chromosome uncovers the recent oriental origin of modern stallions
B Wallner, N Palmieri, C Vogl, D Rigler, E Bozlak, T Druml, ...
Current Biology 27 (13), 2029-2035. e5, 2017
Unraveling gene function in agricultural species using gene co-expression networks
RJ Schaefer, JM Michno, CL Myers
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 53-63, 2017
Genome-Wide Association Study Implicates Testis-Sperm Specific FKBP6 as a Susceptibility Locus for Impaired Acrosome Reaction in Stallions
T Raudsepp, ME McCue, PJ Das, L Dobson, M Vishnoi, KL Fritz, ...
PLoS genetics 8 (12), e1003139, 2012
Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias
L Li, R Briskine, R Schaefer, PS Schnable, CL Myers, LE Flagel, ...
BMC genomics 17 (1), 1-15, 2016
The horse Y chromosome as an informative marker for tracing sire lines
S Felkel, C Vogl, D Rigler, V Dobretsberger, BP Chowdhary, O Distl, ...
Scientific reports 9 (1), 6095, 2019
Genome-wide signatures of selection reveal genes associated with performance in American quarter horse subpopulations
F Avila, JR Mickelson, RJ Schaefer, ME McCue
Frontiers in Genetics 9, 249, 2018
Discovering functional modules across diverse maize transcriptomes using COB, the co-expression browser
RJ Schaefer, R Briskine, NM Springer, CL Myers
PloS one 9 (6), e99193, 2014
Evidence of Positive Selection for a Glycogen Synthase (GYS1) Mutation in Domestic Horse Populations
AM McCoy, R Schaefer, JL Petersen, PL Morrell, MA Slamka, ...
Journal of heredity 105 (2), 163-172, 2014
Robust remapping of equine SNP array coordinates to EquCab3
SK Beeson, RJ Schaefer, VC Mason, ME McCue
Animal genetics 50 (1), 114, 2019
GWAS and coexpression network reveal ionomic variation in cultivated peanut
H Zhang, ML Wang, R Schaefer, P Dang, T Jiang, C Chen
Journal of agricultural and food chemistry 67 (43), 12026-12036, 2019
Genetic architecture of maize rind strength revealed by the analysis of divergently selected populations
R Kumar, A Gyawali, GD Morrison, CA Saski, DJ Robertson, DD Cook, ...
Plant and Cell Physiology 62 (7), 1199-1214, 2021
Genetic variation and the distribution of variant types in the horse
SA Durward-Akhurst, RJ Schaefer, B Grantham, WK Carey, JR Mickelson, ...
Frontiers in genetics 12, 2428, 2021
Equine genotyping arrays
RJ Schaefer, ME McCue
Veterinary Clinics of North America: Equine Practice 36 (2), 183-193, 2020
eQTL discovery and their association with severe equine asthma in European Warmblood horses
VC Mason, RJ Schaefer, ME McCue, T Leeb, V Gerber
BMC genomics 19 (1), 1-15, 2018
Fine-mapping of 18q21. 1 locus identifies single nucleotide polymorphisms associated with nonsyndromic cleft lip with or without cleft palate
AK Mitra, HAF Stessman, RJ Schaefer, W Wang, CL Myers, BG Van Ness, ...
Frontiers in Genetics 7, 88, 2016
Functional contexts of adipose and gluteal muscle tissue gene co-expression networks in the domestic horse
RJ Schaefer, J Cullen, J Manfredi, ME McCue
Integrative and comparative biology 63 (1), 238-249, 2023
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