Follow
Geoffrey Fudenberg
Geoffrey Fudenberg
Verified email at usc.edu - Homepage
Title
Cited by
Cited by
Year
Ultrahigh electron mobility in suspended graphene
KI Bolotin, KJ Sikes, Z Jiang, M Klima, G Fudenberg, J Hone, P Kim, ...
Solid state communications 146 (9-10), 351-355, 2008
98462008
Formation of chromosomal domains by loop extrusion
G Fudenberg, M Imakaev, C Lu, A Goloborodko, N Abdennur, LA Mirny
Cell reports 15 (9), 2038-2049, 2016
17222016
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
M Imakaev, G Fudenberg, RP McCord, N Naumova, A Goloborodko, ...
Nature methods 9 (10), 999-1003, 2012
13402012
Two independent modes of chromatin organization revealed by cohesin removal
W Schwarzer, N Abdennur, A Goloborodko, A Pekowska, G Fudenberg, ...
Nature 551 (7678), 51-56, 2017
10602017
Organization of the mitotic chromosome
N Naumova, M Imakaev, G Fudenberg, Y Zhan, BR Lajoie, LA Mirny, ...
Science 342 (6161), 948-953, 2013
10142013
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
AN Boettiger, B Bintu, JR Moffitt, S Wang, BJ Beliveau, G Fudenberg, ...
Nature 529 (7586), 418-422, 2016
8322016
Chromatin organization by an interplay of loop extrusion and compartmental segregation
J Nuebler, G Fudenberg, M Imakaev, N Abdennur, L Mirny
Biophysical Journal 114 (3), 30a, 2018
5882018
Heterochromatin drives compartmentalization of inverted and conventional nuclei
M Falk, Y Feodorova, N Naumova, M Imakaev, BR Lajoie, H Leonhardt, ...
Nature 570 (7761), 395-399, 2019
5312019
Genome-wide maps of nuclear lamina interactions in single human cells
J Kind, L Pagie, SS de Vries, L Nahidiazar, SS Dey, M Bienko, Y Zhan, ...
Cell 163 (1), 134-147, 2015
4792015
Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe
T Mizuguchi, G Fudenberg, S Mehta, JM Belton, N Taneja, HD Folco, ...
Nature 516 (7531), 432-435, 2014
3012014
Emerging evidence of chromosome folding by loop extrusion
G Fudenberg, N Abdennur, M Imakaev, A Goloborodko, LA Mirny
Cold Spring Harbor symposia on quantitative biology 82, 45-55, 2017
2722017
High-order chromatin architecture determines the landscape of chromosomal alterations in cancer
G Fudenberg, G Getz, M Meyerson, L Mirny
Nature Precedings, 1-1, 2011
2332011
Higher-order chromatin structure: bridging physics and biology
G Fudenberg, LA Mirny
Current opinion in genetics & development 22 (2), 115-124, 2012
2032012
Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome
THS Hsieh, G Fudenberg, A Goloborodko, OJ Rando
Nature methods 13 (12), 1009-1011, 2016
1702016
Predicting 3D genome folding from DNA sequence with Akita
G Fudenberg, DR Kelley, KS Pollard
Nature methods 17 (11), 1111-1117, 2020
1642020
Chromatin loops as allosteric modulators of enhancer-promoter interactions
B Doyle, G Fudenberg, M Imakaev, LA Mirny
PLoS computational biology 10 (10), e1003867, 2014
1382014
Molecular basis of CTCF binding polarity in genome folding
EP Nora, L Caccianini, G Fudenberg, K So, V Kameswaran, A Nagle, ...
Nature communications 11 (1), 5612, 2020
1312020
SMC complexes differentially compact mitotic chromosomes according to genomic context
SA Schalbetter, A Goloborodko, G Fudenberg, JM Belton, C Miles, M Yu, ...
Nature cell biology 19 (9), 1071-1080, 2017
1272017
FISH-ing for captured contacts: towards reconciling FISH and 3C
G Fudenberg, M Imakaev
Nature methods 14 (7), 673-678, 2017
1222017
Chromatin features constrain structural variation across evolutionary timescales
G Fudenberg, KS Pollard
Proceedings of the National Academy of Sciences 116 (6), 2175-2180, 2019
1072019
The system can't perform the operation now. Try again later.
Articles 1–20