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Ngoc Hieu Tran
Ngoc Hieu Tran
Cheriton School of Computer Science, University of Waterloo, Canada
Verified email at uwaterloo.ca
Title
Cited by
Cited by
Year
De novo peptide sequencing by deep learning
NH Tran, X Zhang, L Xin, B Shan, M Li
Proceedings of the National Academy of Sciences, 2017
3692017
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
NH Tran, R Qiao, L Xin, X Chen, C Liu, X Zhang, B Shan, A Ghodsi, M Li
Nature methods 16 (1), 63-66, 2019
2862019
Complete De Novo Assembly of Monoclonal Antibody Sequences
NH Tran, MZ Rahman, L He, L Xin, B Shan, M Li
Scientific Reports, 2016
1252016
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices
R Qiao, NH Tran, L Xin, X Chen, M Li, B Shan, A Ghodsi
Nature Machine Intelligence, 1-6, 2021
61*2021
Counting motifs in the human interactome
NH Tran, KP Choi, L Zhang
Nature communications, 2013
612013
DeepIso: A Deep Learning Model for Peptide Feature Detection from LC-MS map
FT Zohora, MZ Rahman, NH Tran, L Xin, B Shan, M Li
Scientific Reports 9 (1), 1-13, 2019
592019
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics
L Xin, R Qiao, X Chen, H Tran, S Pan, S Rabinoviz, H Bian, X He, B Morse, ...
Nature Communications 13 (1), 1-9, 2022
432022
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines
NH Tran, R Qiao, L Xin, X Chen, B Shan, M Li
Nature Machine Intelligence 2 (12), 764-771, 2020
302020
Profiling the transcription factor regulatory networks of human cell types
S Zhang, D Tian, NH Tran, KP Choi, L Zhang
Nucleic acids research, 2014
242014
Comparison of next-generation sequencing samples using compression-based distances and its application to phylogenetic reconstruction
NH Tran, X Chen
BMC research notes, 2014
182014
Deep Omics
NH Tran, X Zhang, M Li
Proteomics 18 (2), 1700319, 2018
142018
A tale of solving two computational challenges in protein science: neoantigen prediction and protein structure prediction
NH Tran, J Xu, M Li
Briefings in Bioinformatics 23 (1), bbab493, 2022
112022
Personalized workflow to identify optimal T-cell epitopes for peptide-based vaccines against COVID-19
R Qiao, NH Tran, B Shan, A Ghodsi, M Li
arXiv preprint arXiv:2003.10650, 2020
112020
AMAS: optimizing the partition and filtration of adaptive seeds to speed up read mapping
NH Tran, X Chen
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015
10*2015
Genetic profiling of Vietnamese population from large-scale genomic analysis of non-invasive prenatal testing data
NH Tran, TB Vo, VT Nguyen, NT Tran, THN Trinh, HAT Pham, THT Dao, ...
Scientific reports 10 (1), 1-8, 2020
7*2020
Genetic landscape of recessive diseases in the Vietnamese population from large‐scale clinical exome sequencing
NH Tran, TH Nguyen Thi, HS Tang, LP Hoang, THL Nguyen, NT Tran, ...
Human Mutation 42 (10), 1229-1238, 2021
62021
Protein identification with deep learning: from abc to xyz
NH Tran, Z Levine, L Xin, B Shan, M Li
arXiv preprint arXiv:1710.02765, 2017
62017
Glycopeptide database search and de novo sequencing with PEAKS GlycanFinder enable highly sensitive glycoproteomics
W Sun, Q Zhang, X Zhang, NH Tran, M Ziaur Rahman, Z Chen, C Peng, ...
Nature Communications 14 (1), 4046, 2023
52023
Methods and systems for assembly of protein sequences
NH Tran, MZ Rahman, L He, L Xin, B Shan, M Li
US Patent App. 15/599,431, 2017
52017
Deep neural network for detecting arbitrary precision peptide features through attention based segmentation
FT Zohora, MZ Rahman, NH Tran, L Xin, B Shan, M Li
Scientific reports 11 (1), 1-16, 2021
42021
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