| Sustainable data analysis with Snakemake F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... F1000Research 10, 2021 | 848* | 2021 |
| Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system A Galgano, M Forrer, L Jaskiewicz, A Kanitz, M Zavolan, AP Gerber PLoS One 3 (9), e3164, 2008 | 317 | 2008 |
| Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data A Kanitz, F Gypas, AJ Gruber, AR Gruber, G Martin, M Zavolan Genome biology 16, 1-26, 2015 | 164 | 2015 |
| PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing CJ Herrmann, R Schmidt, A Kanitz, P Artimo, AJ Gruber, M Zavolan Nucleic acids research 48 (D1), D174-D179, 2020 | 158 | 2020 |
| GA4GH: International policies and standards for data sharing across genomic research and healthcare HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ... Cell genomics 1 (2), 2021 | 129 | 2021 |
| The expression levels of microRNA-361-5p and its target VEGFA are inversely correlated in human cutaneous squamous cell carcinoma A Kanitz, J Imig, PJ Dziunycz, A Primorac, A Galgano, GFL Hofbauer, ... PLoS One 7 (11), e49568, 2012 | 88 | 2012 |
| Structural analysis of the L-alanoyl-D-glutamate endopeptidase domain of Listeria bacteriophage endolysin Ply500 reveals a new member of the LAS peptidase family IP Korndörfer, A Kanitz, J Danzer, M Zimmer, MJ Loessner, A Skerra Acta Crystallographica Section D: Biological Crystallography 64 (6), 644-650, 2008 | 69 | 2008 |
| RNA regulons and the RNA-protein interaction network J Imig, A Kanitz, AP Gerber Biomolecular concepts 3 (5), 403-414, 2012 | 32 | 2012 |
| Preferential gene transfer of lentiviral vectors to liver-derived cells, using a hepatitis B peptide displayed on GP64 DM Markusic, A Kanitz, RPJ Oude-Elferink, J Seppen Human gene therapy 18 (7), 673-679, 2007 | 27 | 2007 |
| Circuitry of mRNA regulation A Kanitz, AP Gerber Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (2), 245-251, 2010 | 26 | 2010 |
| Tandem RNA isolation reveals functional rearrangement of RNA-binding proteins on CDKN1B/p27Kip1 3’UTRs in cisplatin treated cells V Iadevaia, MD Wouters, A Kanitz, AM Matia-González, EE Laing, ... RNA biology 17 (1), 33-46, 2020 | 16 | 2020 |
| CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis S Ghosh, M Ataman, M Bak, A Börsch, A Schmidt, K Buczak, G Martin, ... Nucleic acids research 50 (6), 3096-3114, 2022 | 13 | 2022 |
| MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome Y Wang, C Soneson, AL Malinowska, A Laski, S Ghosh, A Kanitz, ... Nucleic Acids Research 49 (1), 25-37, 2021 | 7 | 2021 |
| Conserved regulation of RNA processing in somatic cell reprogramming A Kanitz, AP Syed, K Kaji, M Zavolan BMC genomics 20, 1-19, 2019 | 7 | 2019 |
| Untargeted sequencing of circulating microRNAs in a healthy and diseased older population L Streese, P Demougin, P Iborra, A Kanitz, A Deiseroth, JM Kröpfl, ... Scientific reports 12 (1), 2991, 2022 | 6 | 2022 |
| RO-Crate Metadata Specification 1.1 P Sefton, EÓ Carragáin, S Soiland-Reyes, O Corcho, D Garijo, R Palma, ... researchobject. org, 2020 | 6 | 2020 |
| RNA splicing and its connection with other regulatory layers in somatic cell reprogramming M Zavolan, A Kanitz Current opinion in cell biology 52, 8-13, 2018 | 6 | 2018 |
| Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann, W Danecka, ... RNA 29 (12), 1839-1855, 2023 | 5 | 2023 |
| MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans A Sendoel, D Subasic, L Ducoli, M Keller, E Michel, I Kohler, KD Singh, ... Cell Death & Differentiation 26 (10), 2157-2178, 2019 | 5 | 2019 |
| ZARP: An automated workflow for processing of RNA-seq data M Katsantoni, F Gypas, CJ Herrmann, D Burri, M Bak, P Iborra, K Agarwal, ... bioRxiv, 2021.11. 18.469017, 2021 | 3 | 2021 |
Mihaela ZavolanProfessor of Computational Biology, Biozentrum, University of BaselVerified email at unibas.ch
