| Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study DW Eyre, SF Lumley, D O'Donnell, M Campbell, E Sims, E Lawson, ... Elife 9, e60675, 2020 | 271 | 2020 |
| Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ... Microbial genomics 5 (9), e000294, 2019 | 227 | 2019 |
| The duration, dynamics, and determinants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antibody responses in individual healthcare workers SF Lumley, J Wei, D O˘Donnell, NE Stoesser, PC Matthews, A Howarth, ... Clinical Infectious Diseases 73 (3), e699-e709, 2021 | 159 | 2021 |
| Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices ND Sanderson, TL Street, D Foster, J Swann, BL Atkins, AJ Brent, ... BMC genomics 19, 1-11, 2018 | 130 | 2018 |
| The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ... Environmental Microbiome 14 (1), 1-15, 2019 | 81 | 2019 |
| Epidemiological data and genome sequencing reveals that nosocomial transmission of SARS-CoV-2 is underestimated and mostly mediated by a small number of highly infectious … SF Lumley, B Constantinides, N Sanderson, G Rodger, TL Street, ... Journal of Infection 83 (4), 473-482, 2021 | 64 | 2021 |
| Niche and local geography shape the pangenome of wastewater-and livestock-associated Enterobacteriaceae LP Shaw, KK Chau, J Kavanagh, M AbuOun, E Stubberfield, HS Gweon, ... Science Advances 7 (15), eabe3868, 2021 | 50 | 2021 |
| Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli TJ Davies, N Stoesser, AE Sheppard, M Abuoun, P Fowler, J Swann, ... Antimicrobial agents and chemotherapy 64 (6), 2020 | 41 | 2020 |
| An observational cohort study on the incidence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and B. 1.1. 7 variant infection in healthcare workers … SF Lumley, G Rodger, B Constantinides, N Sanderson, KK Chau, ... Clinical Infectious Diseases 74 (7), 1208-1219, 2022 | 32 | 2022 |
| High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing ND Sanderson, J Swann, L Barker, J Kavanagh, S Hoosdally, D Crook, ... Genome Research 30 (9), 1354-1363, 2020 | 32 | 2020 |
| Genomic network analysis of environmental and livestock F-type plasmid populations W Matlock, KK Chau, M AbuOun, E Stubberfield, L Barker, J Kavanagh, ... The ISME journal 15 (8), 2322-2335, 2021 | 28 | 2021 |
| Optimized use of Oxford Nanopore flowcells for hybrid assemblies S Lipworth, H Pickford, N Sanderson, KK Chau, J Kavanagh, L Barker, ... Microbial genomics 6 (11), e000453, 2020 | 20 | 2020 |
| Quantitative fat and R2* mapping in vivo to measure lipid‐rich necrotic core and intraplaque hemorrhage in carotid atherosclerosis S Koppal, M Warntjes, J Swann, P Dyverfeldt, J Kihlberg, R Moreno, ... Magnetic resonance in medicine 78 (1), 285-296, 2017 | 17 | 2017 |
| On Behalf Of The Rehab C (2019) Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ... Microb Genom 5 (9), 0 | 16 | |
| Population-level faecal metagenomic profiling as a tool to predict antimicrobial resistance in Enterobacterales isolates causing invasive infections: An exploratory study … OT Auguet, R Niehus, HS Gweon, JA Berkley, J Waichungo, T Njim, ... EClinicalMedicine 36, 2021 | 13 | 2021 |
| OUH Microbiology laboratory; OUH Infection Prevention and Control team. Epidemiological data and genome sequencing reveals that nosocomial transmission of SARS-CoV-2 is … SF Lumley, B Constantinides, N Sanderson, G Rodger, TL Street, ... J Infect 83 (4), 473-482, 2021 | 7 | 2021 |
| ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads M Hunt, J Swann, B Constantinides, PW Fowler, Z Iqbal Bioinformatics 38 (12), 3291-3293, 2022 | 6 | 2022 |
| Rapid turnaround multiplex sequencing of SARS-CoV-2: comparing tiling amplicon protocol performance B Constantinides, H Webster, J Gentry, J Bastable, L Dunn, S Oakley, ... medRxiv, 2021.12. 28.21268461, 2022 | 5 | 2022 |
| Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of bla KPC-carbapenemase-producing … N Stoesser, R George, Z Aiken, HTT Phan, S Lipworth, DH Wyllie, ... medRxiv, 2021.11. 26.21266267, 2021 | 3 | 2021 |
| Metrics for public health perspective surveillance of bacterial antibiotic resistance in low-and middle-income countries OT Auguet, R Niehus, HS Gweon, JA Berkley, J Waichungo, T Njim, ... Biorxiv, 2020.02. 10.941930, 2020 | 3 | 2020 |
Nicole StoesserVerified email at ndm.ox.ac.uk
