| FastTree 2–approximately maximum-likelihood trees for large alignments MN Price, PS Dehal, AP Arkin PloS one 5 (3), e9490, 2010 | 11984 | 2010 |
| FastTree: computing large minimum evolution trees with profiles instead of a distance matrix MN Price, PS Dehal, AP Arkin Molecular biology and evolution 26 (7), 1641-1650, 2009 | 4438 | 2009 |
| Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes S Aparicio, J Chapman, E Stupka, N Putnam, J Chia, P Dehal, ... Science 297 (5585), 1301-1310, 2002 | 1879 | 2002 |
| The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins P Dehal, Y Satou, RK Campbell, J Chapman, B Degnan, A De Tomaso, ... Science 298 (5601), 2157-2167, 2002 | 1841 | 2002 |
| Two rounds of whole genome duplication in the ancestral vertebrate P Dehal, JL Boore PLoS biology 3 (10), e314, 2005 | 1663 | 2005 |
| Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis BM Tyler, S Tripathy, X Zhang, P Dehal, RHY Jiang, A Aerts, ... Science 313 (5791), 1261-1266, 2006 | 1225 | 2006 |
| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1025 | 2018 |
| Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis TW Jeffries, IV Grigoriev, J Grimwood, JM Laplaza, A Aerts, A Salamov, ... Nature biotechnology 25 (3), 319-326, 2007 | 633 | 2007 |
| TreeFam: a curated database of phylogenetic trees of animal gene families H Li, A Coghlan, J Ruan, LJ Coin, JK Heriche, L Osmotherly, R Li, T Liu, ... Nucleic acids research 34 (suppl_1), D572-D580, 2006 | 603 | 2006 |
| A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 560 | 2021 |
| Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis SB Goodwin, S Ben M'Barek, B Dhillon, AHJ Wittenberg, CF Crane, ... PLoS genetics 7 (6), e1002070, 2011 | 554 | 2011 |
| MicrobesOnline: an integrated portal for comparative and functional genomics PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ... Nucleic acids research 38 (suppl_1), D396-D400, 2010 | 528 | 2010 |
| Environmental genomics reveals a single-species ecosystem deep within Earth D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ... Science 322 (5899), 275-278, 2008 | 526 | 2008 |
| Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome L Baxter, S Tripathy, N Ishaque, N Boot, A Cabral, E Kemen, M Thines, ... science 330 (6010), 1549-1551, 2010 | 507 | 2010 |
| The DNA sequence and biology of human chromosome 19 J Grimwood, LA Gordon, A Olsen, A Terry, J Schmutz, J Lamerdin, ... Nature 428 (6982), 529-535, 2004 | 383 | 2004 |
| Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii NFW Saunders, T Thomas, PMG Curmi, JS Mattick, E Kuczek, R Slade, ... Genome research 13 (7), 1580-1588, 2003 | 319 | 2003 |
| Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution P Dehal, P Predki, AS Olsen, A Kobayashi, P Folta, S Lucas, M Land, ... Science 293 (5527), 104-111, 2001 | 250 | 2001 |
| Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli MN Price, PS Dehal, AP Arkin Genome biology 9, 1-20, 2008 | 154 | 2008 |
| Cell-Wide Responses to Low-Oxygen Exposure in Desulfovibrio vulgaris Hildenborough A Mukhopadhyay, AM Redding, MP Joachimiak, AP Arkin, SE Borglin, ... Journal of bacteriology 189 (16), 5996-6010, 2007 | 131 | 2007 |
| Orthologous transcription factors in bacteria have different functions and regulate different genes MN Price, PS Dehal, AP Arkin PLoS computational biology 3 (9), e175, 2007 | 120 | 2007 |
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OVerified email at lbl.gov
