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Ronald M. Levy
Ronald M. Levy
Professor of Chemistry
Verified email at temple.edu - Homepage
Title
Cited by
Cited by
Year
Integrated modeling program, applied chemical theory (IMPACT)
JL Banks, HS Beard, Y Cao, AE Cho, W Damm, R Farid, AK Felts, ...
Journal of computational chemistry 26 (16), 1752-1780, 2005
14052005
Enthalpy− entropy and cavity decomposition of alkane hydration free energies: numerical results and implications for theories of hydrophobic solvation
E Gallicchio, MM Kubo, RM Levy
The Journal of Physical Chemistry B 104 (26), 6271-6285, 2000
4172000
AGBNP: An analytic implicit solvent model suitable for molecular dynamics simulations and high‐resolution modeling
E Gallicchio, RM Levy
Journal of computational chemistry 25 (4), 479-499, 2004
3992004
Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex
V Mekler, E Kortkhonjia, J Mukhopadhyay, J Knight, A Revyakin, ...
Cell 108 (5), 599-614, 2002
3482002
Computer simulations with explicit solvent: recent progress in the thermodynamic decomposition of free energies and in modeling electrostatic effects
RM Levy, E Gallicchio
Annual review of physical chemistry 49 (1), 531-567, 1998
3311998
On the nonpolar hydration free energy of proteins: surface area and continuum solvent models for the solute− solvent interaction energy
RM Levy, LY Zhang, E Gallicchio, AK Felts
Journal of the American Chemical Society 125 (31), 9523-9530, 2003
3282003
Simplified amino acid alphabets for protein fold recognition and implications for folding
LR Murphy, A Wallqvist, RM Levy
Protein engineering 13 (3), 149-152, 2000
3252000
Evaluation of the configurational entropy for proteins: application to molecular dynamics simulations of an α-helix
RM Levy, M Karplus, J Kushick, D Perahia
Macromolecules 17 (7), 1370-1374, 1984
3061984
The SGB/NP hydration free energy model based on the surface generalized born solvent reaction field and novel nonpolar hydration free energy estimators
E Gallicchio, LY Zhang, RM Levy
Journal of computational chemistry 23 (5), 517-529, 2002
2982002
Quasi‐harmonic method for studying very low frequency modes in proteins
RM Levy, AR Srinivasan, WK Olson, JA McCammon
Biopolymers: Original Research on Biomolecules 23 (6), 1099-1112, 1984
2791984
Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel
J Mukhopadhyay, E Sineva, J Knight, RM Levy, RH Ebright
Molecular cell 14 (6), 739-751, 2004
2512004
Computer simulations of the dielectric properties of water: Studies of the simple point charge and transferrable intermolecular potential models
HE Alper, RM Levy
The Journal of chemical physics 91 (2), 1242-1251, 1989
2501989
An anisotropic polarizable water model: incorporation of all-atom polarizabilities into molecular mechanics force fields
DN Bernardo, Y Ding, K Krogh-Jespersen, RM Levy
The Journal of Physical Chemistry 98 (15), 4180-4187, 1994
2401994
Structural reorganization of α-synuclein at low pH observed by NMR and REMD simulations
KP Wu, DS Weinstock, C Narayanan, RM Levy, J Baum
Journal of molecular biology 391 (4), 784-796, 2009
2142009
Temperature weighted histogram analysis method, replica exchange, and transition paths
E Gallicchio, M Andrec, AK Felts, RM Levy
The Journal of Physical Chemistry B 109 (14), 6722-6731, 2005
2142005
Conformational analysis of the DFG-out kinase motif and biochemical profiling of structurally validated type II inhibitors
RSK Vijayan, P He, V Modi, KC Duong-Ly, H Ma, JR Peterson, ...
Journal of medicinal chemistry 58 (1), 466-479, 2015
2072015
Effect of anisotropy and anharmonicity on protein crystallographic refinement: an evaluation by molecular dynamics
J Kuriyan, GA Petsko, RM Levy, M Karplus
Journal of molecular biology 190 (2), 227-254, 1986
2061986
Gaussian fluctuation formula for electrostatic free‐energy changes in solution
RM Levy, M Belhadj, DB Kitchen
The Journal of chemical physics 95 (5), 3627-3633, 1991
2051991
Diffusive Langevin dynamics of model alkanes
RM Levy, M Karplus, JA McCammon
Chemical Physics Letters 65 (1), 4-11, 1979
1961979
Comparative performance of several flexible docking programs and scoring functions: enrichment studies for a diverse set of pharmaceutically relevant targets
Z Zhou, AK Felts, RA Friesner, RM Levy
Journal of chemical information and modeling 47 (4), 1599-1608, 2007
1842007
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