| PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Cryst. D 66, 213-221, 2010 | 24093 | 2010 |
| Towards automated crystallographic structure refinement with phenix. refine PV Afonine, RW Grosse-Kunstleve, N Echols, JJ Headd, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 68 (4), 352-367, 2012 | 5351 | 2012 |
| Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ... Acta Crystallographica Section D: Structural Biology 75 (10), 861-877, 2019 | 4869 | 2019 |
| Real-space refinement in PHENIX for cryo-EM and crystallography PV Afonine, BK Poon, RJ Read, OV Sobolev, TC Terwilliger, ... Acta Crystallographica Section D: Structural Biology 74 (6), 531-544, 2018 | 2282 | 2018 |
| Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard TC Terwilliger, RW Grosse-Kunstleve, PV Afonine, NW Moriarty, PH Zwart, ... Acta Crystallographica Section D: Biological Crystallography 64 (1), 61-69, 2008 | 1631 | 2008 |
| Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard TC Terwilliger, PD Adams, RJ Read, AJ McCoy, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 65 (6), 582-601, 2009 | 931 | 2009 |
| The Phenix software for automated determination of macromolecular structures PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ... Methods 55 (1), 94-106, 2011 | 879 | 2011 |
| New tools for the analysis and validation of cryo-EM maps and atomic models PV Afonine, BP Klaholz, NW Moriarty, BK Poon, OV Sobolev, ... Acta Crystallographica Section D: Structural Biology 74 (9), 814-840, 2018 | 632 | 2018 |
| Polder maps: improving OMIT maps by excluding bulk solvent D Liebschner, PV Afonine, NW Moriarty, BK Poon, OV Sobolev, ... Acta Crystallographica Section D: Structural Biology 73 (2), 148-157, 2017 | 620 | 2017 |
| Automated structure solution with the PHENIX suite PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung, TR Ioerger, ... Structural proteomics: high-throughput methods, 419-435, 2008 | 587 | 2008 |
| Structure of photosystem II and substrate binding at room temperature ID Young, M Ibrahim, R Chatterjee, S Gul, FD Fuller, S Koroidov, ... Nature 540 (7633), 453-457, 2016 | 395 | 2016 |
| Joint X-ray and neutron refinement with phenix. refine PV Afonine, M Mustyakimov, RW Grosse-Kunstleve, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 66 (11), 1153-1163, 2010 | 326 | 2010 |
| The Phenix refinement framework PV Afonine CCP4 newsl 42, 8, 2005 | 306 | 2005 |
| Modelling dynamics in protein crystal structures by ensemble refinement BT Burnley, PV Afonine, PD Adams, P Gros elife 1, e00311, 2012 | 290 | 2012 |
| Use of knowledge-based restraints in phenix. refine to improve macromolecular refinement at low resolution JJ Headd, N Echols, PV Afonine, RW Grosse-Kunstleve, VB Chen, ... Acta Crystallographica Section D: Biological Crystallography 68 (4), 381-390, 2012 | 266 | 2012 |
| Structure and membrane remodeling activity of ESCRT-III helical polymers J McCullough, AK Clippinger, N Talledge, ML Skowyra, MG Saunders, ... Science 350 (6267), 1548-1551, 2015 | 264 | 2015 |
| Improvement of cryo-EM maps by density modification TC Terwilliger, SJ Ludtke, RJ Read, PD Adams, PV Afonine Nature methods 17 (9), 923-927, 2020 | 247 | 2020 |
| Automated map sharpening by maximization of detail and connectivity TC Terwilliger, OV Sobolev, PV Afonine, PD Adams Acta Crystallographica Section D: Structural Biology 74 (6), 545-559, 2018 | 236 | 2018 |
| A robust bulk-solvent correction and anisotropic scaling procedure PV Afonine, RW Grosse-Kunstleve, PD Adams Acta Crystallographica Section D: Biological Crystallography 61 (7), 850-855, 2005 | 223 | 2005 |
| Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias TC Terwilliger, RW Grosse-Kunstleve, PV Afonine, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 64 (5), 515-524, 2008 | 211 | 2008 |
