| Open Targets: a platform for therapeutic target identification and validation G Koscielny, P An, D Carvalho-Silva, JA Cham, L Fumis, R Gasparyan, ... Nucleic acids research 45 (D1), D985-D994, 2017 | 489 | 2017 |
| Europe PMC: a full-text literature database for the life sciences and platform for innovation Europe PMC Consortium Nucleic acids research 43 (D1), D1042-D1048, 2015 | 134 | 2015 |
| Assessment of NER solutions against the first and second CALBC Silver Standard Corpus D Rebholz-Schuhmann, AJ Yepes, C Li, S Kafkas, I Lewin, N Kang, ... Journal of biomedical semantics 2 (5), 1-12, 2011 | 79 | 2011 |
| DeepViral: prediction of novel virus–host interactions from protein sequences and infectious disease phenotypes W Liu-Wei, Ş Kafkas, J Chen, NJ Dimonaco, J Tegnér, R Hoehndorf Bioinformatics 37 (17), 2722-2729, 2021 | 51 | 2021 |
| Database citation in full text biomedical articles Ş Kafkas, JH Kim, JR McEntyre PloS one 8 (5), e63184, 2013 | 38 | 2013 |
| EMC10 homozygous variant identified in a family with global developmental delay, mild intellectual disability, and speech delay M Umair, M Ballow, A Asiri, Y Alyafee, A Al Tuwaijri, KM Alhamoudi, ... Clinical Genetics 98 (6), 555-561, 2020 | 36 | 2020 |
| Entity recognition in parallel multi-lingual biomedical corpora: The CLEF-ER laboratory overview D Rebholz-Schuhmann, S Clematide, F Rinaldi, S Kafkas, ... Information Access Evaluation. Multilinguality, Multimodality, and …, 2013 | 36 | 2013 |
| Combining lexical and context features for automatic ontology extension S Althubaiti, Ş Kafkas, M Abdelhakim, R Hoehndorf Journal of biomedical semantics 11 (1), 1-13, 2020 | 27 | 2020 |
| Literature evidence in open targets-a target validation platform Ş Kafkas, I Dunham, J McEntyre Journal of Biomedical Semantics 8, 1-9, 2017 | 25 | 2017 |
| PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research Ş Kafkas, M Abdelhakim, Y Hashish, M Kulmanov, M Abdellatif, ... Scientific data 6 (1), 79, 2019 | 21 | 2019 |
| Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles Ş Kafkas, JH Kim, X Pi, JR McEntyre Journal of biomedical semantics 6 (1), 1-7, 2015 | 20 | 2015 |
| Section level search functionality in Europe PMC Ş Kafkas, X Pi, N Marinos, F Talo’, A Morrison, JR McEntyre Journal of biomedical semantics 6, 1-5, 2015 | 20 | 2015 |
| Ontology based text mining of gene-phenotype associations: application to candidate gene prediction Ş Kafkas, R Hoehndorf Database 2019, baz019, 2019 | 18 | 2019 |
| Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources D Rebholz-Schuhmann, S Kafkas, JH Kim, C Li, AJ Yepes, R Hoehndorf, ... Journal of biomedical semantics 4, 1-18, 2013 | 18 | 2013 |
| What is the right sequencing approach? Solo VS extended family analysis in consanguineous populations A Alfares, L Alsubaie, T Aloraini, A Alaskar, A Althagafi, A Alahmad, ... BMC medical genomics 13, 1-8, 2020 | 16 | 2020 |
| DDIEM: drug database for inborn errors of metabolism M Abdelhakim, E McMurray, AR Syed, S Kafkas, AA Kamau, PN Schofield, ... Orphanet Journal of Rare Diseases 15, 1-12, 2020 | 16 | 2020 |
| CALBC: Releasing the Final Corpora. S Kafkas, I Lewin, D Milward, EM van Mulligen, JA Kors, U Hahn, ... LREC, 2923-2926, 2012 | 14 | 2012 |
| Ontology based mining of pathogen–disease associations from literature Ş Kafkas, R Hoehndorf Journal of biomedical semantics 10, 1-5, 2019 | 13 | 2019 |
| Exploring the Generation and Integration of Publishable Scientic Facts Using the Concept of Nano-publications. A Clare, S Croset, C Grabmueller, S Kafkas, M Liakata, A Oellrich, ... Sepublica (workshop of Extended Semantic Web Conference), 2011 | 13 | 2011 |
| Centroids: Gold standards with distributional variation. I Lewin, S Kafkas, D Rebholz-Schuhmann LREC, 3894-3900, 2012 | 12 | 2012 |
