Margarita Theodoropoulou
Margarita Theodoropoulou
Post-Doctoral Researcher Fellow, Computational Genetics research group, Department of Computer
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CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models
ZS Ioannidou, MC Theodoropoulou, NC Papandreou, JH Willis, ...
Insect biochemistry and molecular biology 52, 51-59, 2014
Interactions of the α-subunits of heterotrimeric G-proteins with GPCRs, effectors and RGS proteins: a critical review and analysis of interacting surfaces, conformational …
FA Baltoumas, MC Theodoropoulou, SJ Hamodrakas
Journal of structural biology 182 (3), 209-218, 2013
gpDB: a database of GPCRs, G-proteins, effectors and their interactions
MC Theodoropoulou, PG Bagos, IC Spyropoulos, SJ Hamodrakas
Bioinformatics 24 (12), 1471-1472, 2008
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques
VP Satagopam, MC Theodoropoulou, CK Stampolakis, GA Pavlopoulos, ...
Database 2010, 2010
Molecular dynamics simulations and structure-based network analysis reveal structural and functional aspects of G-protein coupled receptor dimer interactions
FA Baltoumas, MC Theodoropoulou, SJ Hamodrakas
Journal of computer-aided molecular design 30 (6), 489-512, 2016
Semi-supervised learning of Hidden Markov Models for biological sequence analysis
IA Tamposis, KD Tsirigos, MC Theodoropoulou, PI Kontou, PG Bagos
Bioinformatics 35 (13), 2208-2215, 2019
Alternative splicing detection tool—a novel PERL algorithm for sensitive detection of splicing events, based on next-generation sequencing data analysis
PG Adamopoulos, MC Theodoropoulou, A Scorilas
Annals of translational medicine 6 (12), 2018
Extending hidden Markov models to allow conditioning on previous observations
IA Tamposis, MC Theodoropoulou, KD Tsirigos, PG Bagos
Journal of bioinformatics and computational biology 16 (05), 1850019, 2018
GprotPRED: Annotation of Gα, Gβ and Gγ subunits of G-proteins using profile Hidden Markov Models (pHMMs) and application to proteomes
VD Kostiou, MC Theodoropoulou, SJ Hamodrakas
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1864 (5), 435-440, 2016
Landscape of eukaryotic transmembrane beta barrel proteins
AF Roumia, MC Theodoropoulou, KD Tsirigos, H Nielsen, PG Bagos
Journal of proteome research 19 (3), 1209-1221, 2020
Viterbi training of Hidden Markov Models for labeled sequences
MC Theodoropoulou, I Mintsopoulos, PG Bagos
F1000Research 6, 2017
GPCRpipe: a pipeline for the detection of G-protein coupled receptors in proteomes
M Theodoropoulou, G Tsaousis, Z Litou, P Bagos, S Hamodrakas
Proceedings of the 21st annual international conference on Intelligent …, 2013
JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis
IA Tamposis, KD Tsirigos, MC Theodoropoulou, PI Kontou, GN Tsaousis, ...
Bioinformatics 35 (24), 5309-5312, 2019
The human GPCR signal transduction network
P Kontou, A Pavlopoulou, N Dimou, M Theodoropoulou, G Braliou, ...
Network Modeling Analysis in Health Informatics and Bioinformatics 10 (1), 1-12, 2021
OMPdb: A global hub of beta-barrel outer membrane proteins
AF Roumia, KD Tsirigos, MC Theodoropoulou, IA Tamposis, ...
Frontiers in Bioinformatics 1, 9, 2021
Computational Studies on Mitochondrial Transmembrane beta-barrel Proteins.
AF Roumia, MC Theodoropoulou, PG Bagos
Computational studies on eukaryotic transmembrane β-barrel proteins
AF Roumia, MC Theodoropoulou, KD Tsirigos, PG Bagos
PeerJ Preprints, 2018
Predicting Alpha Helical Transmembrane Proteins Using HMMs
GN Tsaousis, MC Theodoropoulou, SJ Hamodrakas, PG Bagos
Hidden Markov Models, 63-82, 2017
GPDB: a database of GPCRs and G-proteins, now integrating information concerning interaction with effectors PP3-7
M Theodoropoulou, I Spyropoulos, P Bagos, S Hamodrakas
The Febs Journal 275, 2008
Exploring the effects of cholesterol upon a G-protein coupled receptor heterodimer implicated in Parkinson’s disease
FA Baltoumas, MC Theodoropoulou, SJ Hamodrakas
The 10th Conference of the Hellenic Society for Computational Biology and …, 0
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