Georgios A. Pavlopoulos

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Reinhard SchneiderProf. Bioinformatics, University of Luxembourg, Head of Bioinformatics Core Facility, LuxembourgVerified email at uni.lu
Ioannis IliopoulosAssociate Professor Medical School University of CreteVerified email at med.uoc.gr
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
David Páez-EspinoMammoth BioSciences // DOE-JGIVerified email at mammothbiosci.com
Pantelis BagosProfessor, University of ThessalyVerified email at dib.uth.gr
Nikolas PapanikolaouUniversity of CreteVerified email at uoc.gr
S KossidaProfessor of BioinformaticsVerified email at igh.cnrs.fr
Natalia IvanovaDOE Joint Genome InstituteVerified email at lbl.gov
THEODOSIOS THEODOSIOUFounder TETRAKTYS IntelligenceVerified email at tetraktysintel.com
Theodoros SoldatosVerified email at molecularhealth.com
Evangelos KaratzasPostDoc, BSRC Alexander FlemingVerified email at fleming.gr
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstituteVerified email at lbl.gov
Charalampos MoschopoulosESAT/SISTA KU LeuvenVerified email at esat.kuleuven.be
Neha J VargheseDOE Joint Genome InstituteVerified email at lbl.gov
Evangelos PafilisResearcher C, Hellenic Center Marine Research (HCMR)Verified email at hcmr.gr
Anastasis OulasAssociate Scientist at The Cyprus Institute of Neurology and Genetics (CING)Verified email at cing.ac.cy
Panagiota KontouAssistant Professor, Department of Mathematics, University of ThessalyVerified email at uth.gr
Fotis BaltoumasPost-doctoral Researcher, BSRC "Alexander Fleming"Verified email at fleming.gr
Venkata P. SatagopamResearch Scientist, LCSB, University of LuxembourgVerified email at uni.lu
Yves MoreauUniversity of LeuvenVerified email at esat.kuleuven.be

Georgios A. Pavlopoulos

Director of Bioinformatics (Research Associate Professor), IFBR - BSRC Fleming & pMedGR (UoA)

Verified email at fleming.gr - Homepage

Bioinformatics Genomics Biological Networks Visualization Text-Mining


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Uncovering Earth's Virome D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ... Nature, 2016	801	2016
Using graph theory to analyze biological networks GA Pavlopoulos, M Secrier, CN Moschopoulos, TG Soldatos, S Kossida, ... BioData mining 4, 1-27, 2011	739	2011
Protein structure determination using metagenome sequence data DB Sergey Ovchinnikov, Hahnbeom Park, Neha Varghese, Po-Ssu Huang, Georgios ... Science 355 (6322), 294-298, 2017	466	2017
Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ... Bioinformatics and biology insights 9, BBI. S12462, 2015	407	2015
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ... Nature biotechnology 36 (4), 359-367, 2018	362	2018
A survey of visualization tools for biological network analysis GA Pavlopoulos, AL Wegener, R Schneider Biodata mining 1, 12, 2008	237	2008
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ... Nature biotechnology 35 (7), 676, 2017	224	2017
IMG/VR: A database of cultured and uncultured DNA Viruses and Retroviruses D Paez-Espino, IMA Chen A, K Palaniappan, A Ratner, K Chu, E Szeto, ... Nucleic Acids Research, 2016	177	2016
Large-scale analyses of human microbiomes reveal thousands of small, novel genes H Sberro, BJ Fremin, S Zlitni, F Edfors, N Greenfield, MP Snyder, ... Cell 178 (5), 1245-1259. e14, 2019	154	2019
A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in bioengineering and biotechnology 8, 34, 2020	129	2020
Bipartite graphs in systems biology and medicine: a survey of methods and applications GA Pavlopoulos, PI Kontou, A Pavlopoulou, C Bouyioukos, E Markou, ... GigaScience 7 (4), giy014, 2018	128	2018
Arena3D: visualization of biological networks in 3D GA Pavlopoulos, S O'Donoghue, V Satagopam, T Soldatos, E Pafilis, ... BMC systems biology 2 (1), 104, 2008	127	2008
HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks A Azad, GA Pavlopoulos, CA Ouzounis, NC Kyrpides, A Buluç Nucleic acids research 46 (6), e33-e33, 2018	110	2018
Non-targeted virus sequence discovery pipeline and virus clustering for metagenomic data D Paez-Espino, GA Pavlopoulos, NN Ivanova, K NC Nature Protocols, 1673–1682, 2017	106	2017
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, A Enright, ... GigaScience 4 (38), 2015	105	2015
A reference guide for tree analysis and visualization GA Pavlopoulos, TG Soldatos, A Barbosa-Silva, R Schneider BioData mining 3, 1-24, 2010	100	2010
Protein–protein interaction predictions using text mining methods N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos Methods 74, 47-53, 2015	96	2015
Unraveling genomic variation from next generation sequencing data GA Pavlopoulos, A Oulas, E Iacucci, A Sifrim, Y Moreau, R Schneider, ... BioData Mining 6 (13), 2013	79	2013
Medusa: A tool for exploring and clustering biological networks GA Pavlopoulos, S Hooper, A Sifrim, R Schneider, J Aerts BMC Research Notes 4 (1), 384, 2011	60	2011
Empirical comparison of visualization tools for larger-scale network analysis GA Pavlopoulos, D Paez-Espino, NC Kyrpides, I I. Advances in Bioinformatics 2017, 8, 2017	53	2017

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