Dimitra Karagkouni, PhD
Dimitra Karagkouni, PhD
PhD in Bioinformatics, University of Thessaly & Hellenic Pasteur Institute
Verified email at uth.gr
TitleCited byYear
DIANA-miRPath v3. 0: deciphering microRNA function with experimental support
IS Vlachos, K Zagganas, MD Paraskevopoulou, G Georgakilas, ...
Nucleic acids research 43 (W1), W460-W466, 2015
5652015
DIANA-TarBase v7. 0: indexing more than half a million experimentally supported miRNA: mRNA interactions
IS Vlachos, MD Paraskevopoulou, D Karagkouni, G Georgakilas, ...
Nucleic acids research 43 (D1), D153-D159, 2014
4902014
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts
MD Paraskevopoulou, IS Vlachos, D Karagkouni, G Georgakilas, ...
Nucleic acids research 44 (D1), D231-D238, 2015
1342015
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
D Karagkouni, MD Paraskevopoulou, S Chatzopoulos, IS Vlachos, ...
Nucleic acids research 46 (D1), D239-D245, 2017
1202017
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species
A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ...
Genome biology 17 (1), 192, 2016
662016
DIANA-mirExTra v2. 0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data
IS Vlachos, T Vergoulis, MD Paraskevopoulou, F Lykokanellos, ...
Nucleic acids research 44 (W1), W128-W134, 2016
172016
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic acids research 47 (D1), D221-D229, 2018
122018
microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions
MD Paraskevopoulou, D Karagkouni, IS Vlachos, S Tastsoglou, ...
Nature communications 9 (1), 3601, 2018
22018
Computational Challenges and-omics Approaches for the Identification of microRNAs and Targets
IS Vlachos, G Georgakilas, S Tastsoglou, MD Paraskevopoulou, ...
Essentials of Noncoding RNA in Neuroscience, 39-59, 2017
12017
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts
D Karagkouni, MD Paraskevopoulou, S Tastsoglou, G Skoufos, ...
Nucleic acids research, 2019
2019
Computational Analysis of non-coding RNA Regulatory Functions on a Transcriptome-wide Scale
D Karagkouni
University of Thessaly, Volos, Greece, 2019
2019
RNAcentral: a hub of information for non-coding RNA sequences (vol 47, pg D221, 2019)
BA Sweeney, AI Petrov, B Burkov, RD Finn, A Bateman, M Szymanski, ...
Nucleic Acids Research 47 (D1), D1250-D1251, 2019
2019
Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly …
A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ...
Genome biology 18 (1), 11, 2017
2017
COMPUTATIONAL CHALLENGES AND-OMICS APPROACHES FOR THE IDENTIFICATION
S Tastsoglou, MD Paraskevopoulou, D Karagkouni, AG Hatzigeorgiou
Essentials of Noncoding RNA in Neuroscience: Ontogenetics, Plasticity of the …, 2017
2017
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