Follow
Dimitra Karagkouni, PhD
Dimitra Karagkouni, PhD
Cancer Research Institute, Department of Pathology, BIDMC, Harvard Medical School, Broad Institute
Verified email at bidmc.harvard.edu
Title
Cited by
Cited by
Year
DIANA-miRPath v3. 0: deciphering microRNA function with experimental support
IS Vlachos, K Zagganas, MD Paraskevopoulou, G Georgakilas, ...
Nucleic acids research 43 (W1), W460-W466, 2015
17572015
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
D Karagkouni, MD Paraskevopoulou, S Chatzopoulos, IS Vlachos, ...
Nucleic acids research 46 (D1), D239-D245, 2018
10492018
DIANA-TarBase v7. 0: indexing more than half a million experimentally supported miRNA: mRNA interactions
IS Vlachos, MD Paraskevopoulou, D Karagkouni, G Georgakilas, ...
Nucleic acids research 43 (D1), D153-D159, 2015
8502015
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts
MD Paraskevopoulou, IS Vlachos, D Karagkouni, G Georgakilas, ...
Nucleic acids research 44 (D1), D231-D238, 2016
6652016
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts
D Karagkouni, MD Paraskevopoulou, S Tastsoglou, G Skoufos, ...
Nucleic acids research 48 (D1), D101-D110, 2020
2752020
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research 47 (D1), D221-D229, 2019
2552019
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Nucleic acids research 49 (D1), D212-D220, 2021
2282021
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly …
A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ...
Genome biology 17, 1-31, 2016
1662016
Characterizing miRNA–lncRNA interplay
D Karagkouni, A Karavangeli, MD Paraskevopoulou, AG Hatzigeorgiou
Long Non-Coding RNAs: Methods and Protocols, 243-262, 2021
532021
SHP-2 and PD-1-SHP-2 signaling regulate myeloid cell differentiation and antitumor responses
A Christofides, XL Katopodi, C Cao, D Karagkouni, K Aliazis, ...
Nature Immunology 24 (1), 55-68, 2023
482023
microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions
MD Paraskevopoulou, D Karagkouni, IS Vlachos, S Tastsoglou, ...
Nature communications 9 (1), 3601, 2018
442018
DIANA-miRPath v4. 0: expanding target-based miRNA functional analysis in cell-type and tissue contexts
S Tastsoglou, G Skoufos, M Miliotis, D Karagkouni, I Koutsoukos, ...
Nucleic Acids Research 51 (W1), W154-W159, 2023
422023
DIANA-mirExTra v2. 0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data
IS Vlachos, T Vergoulis, MD Paraskevopoulou, F Lykokanellos, ...
Nucleic acids research 44 (W1), W128-W134, 2016
412016
DIANA-microT 2023: including predicted targets of virally encoded miRNAs
S Tastsoglou, A Alexiou, D Karagkouni, G Skoufos, E Zacharopoulou, ...
Nucleic acids research 51 (W1), W148-W153, 2023
402023
TarBase-v9. 0 extends experimentally supported miRNA–gene interactions to cell-types and virally encoded miRNAs
G Skoufos, P Kakoulidis, S Tastsoglou, E Zacharopoulou, V Kotsira, ...
Nucleic Acids Research 52 (D1), D304-D310, 2024
312024
A miR-124-mediated post-transcriptional mechanism controlling the cell fate switch of astrocytes to induced neurons
E Papadimitriou, PN Koutsoudaki, I Thanou, D Karagkouni, T Karamitros, ...
Stem Cell Reports 18 (4), 915-935, 2023
222023
Randomized phase II trial of dendritic cell/myeloma fusion vaccine with lenalidomide maintenance after upfront autologous hematopoietic cell transplantation for multiple …
DJ Chung, N Shah, J Wu, B Logan, L Bisharat, N Callander, G Cheloni, ...
Clinical Cancer Research 29 (23), 4784-4796, 2023
132023
DIANA-mAP: analyzing miRNA from raw NGS data to quantification
A Alexiou, D Zisis, I Kavakiotis, M Miliotis, A Koussounadis, D Karagkouni, ...
Genes 12 (1), 46, 2020
122020
A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients
Y Pita-Juarez, D Karagkouni, N Kalavros, JC Melms, S Niezen, ...
BioRxiv, 2022
72022
Transcriptional Profiling of Leishmania infantum Infected Dendritic Cells: Insights into the Role of Immunometabolism in Host-Parasite Interaction
M Margaroni, M Agallou, A Vasilakaki, D Karagkouni, G Skoufos, ...
Microorganisms 10 (7), 1271, 2022
72022
The system can't perform the operation now. Try again later.
Articles 1–20