| Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe KE Holt, S Baker, FX Weill, EC Holmes, A Kitchen, J Yu, V Sangal, ... Nature genetics 44 (9), 1056-1059, 2012 | 341 | 2012 |
| Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses C Firth, A Kitchen, B Shapiro, MA Suchard, EC Holmes, A Rambaut Molecular biology and evolution 27 (9), 2038-2051, 2010 | 329 | 2010 |
| A three-stage colonization model for the peopling of the Americas A Kitchen, MM Miyamoto, CJ Mulligan PLoS One 3 (2), e1596, 2008 | 253 | 2008 |
| Bayesian phylogenetic analysis of Semitic languages identifies an Early Bronze Age origin of Semitic in the Near East A Kitchen, C Ehret, S Assefa, CJ Mulligan Proceedings of the Royal Society B: Biological Sciences 276 (1668), 2703-2710, 2009 | 231 | 2009 |
| Origin of clothing lice indicates early clothing use by anatomically modern humans in Africa MA Toups, A Kitchen, JE Light, DL Reed Molecular biology and evolution 28 (1), 29-32, 2011 | 207 | 2011 |
| The evolutionary history of dogs in the Americas MN Leathlobhair, AR Perri, EK Irving-Pease, KE Witt, A Linderholm, ... Science 361 (6397), 81-85, 2018 | 199 | 2018 |
| Molecular evolution of the insect-specific flaviviruses S Cook, G Moureau, A Kitchen, EA Gould, X de Lamballerie, EC Holmes, ... Journal of General Virology 93 (2), 223-234, 2012 | 191 | 2012 |
| Updated three-stage model for the peopling of the Americas CJ Mulligan, A Kitchen, MM Miyamoto PLoS One 3 (9), e3199, 2008 | 168 | 2008 |
| Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation OB Brynildsrud, CS Pepperell, P Suffys, L Grandjean, J Monteserin, ... Science Advances 4 (10), eaat5869, 2018 | 155 | 2018 |
| The role of selection in shaping diversity of natural M. tuberculosis populations CS Pepperell, AM Casto, A Kitchen, JM Granka, OE Cornejo, EC Holmes, ... PLoS Pathog 9 (8), e1003543, 2013 | 153 | 2013 |
| Family level phylogenies reveal modes of macroevolution in RNA viruses A Kitchen, LA Shackelton, EC Holmes Proceedings of the National Academy of Sciences 108 (1), 238-243, 2011 | 116 | 2011 |
| Origin and phylodynamics of rabbit hemorrhagic disease virus PJ Kerr, A Kitchen, EC Holmes Journal of virology 83 (23), 12129-12138, 2009 | 110 | 2009 |
| Lineage specific histories of Mycobacterium tuberculosis dispersal in Africa and Eurasia MB O'Neill, A Shockey, A Zarley, W Aylward, V Eldholm, A Kitchen, ... Molecular ecology 28 (13), 3241-3256, 2019 | 94 | 2019 |
| Molecular evolution of the tprC, D, I, K, G, and J genes in the pathogenic genus Treponema RR Gray, CJ Mulligan, BJ Molini, ES Sun, L Giacani, C Godornes, ... Molecular biology and evolution 23 (11), 2220-2233, 2006 | 91 | 2006 |
| Yellow fever virus exhibits slower evolutionary dynamics than dengue virus AA Sall, O Faye, M Diallo, C Firth, A Kitchen, EC Holmes Journal of virology 84 (2), 765-772, 2010 | 90 | 2010 |
| The evolutionary dynamics of bluetongue virus G Carpi, EC Holmes, A Kitchen Journal of molecular evolution 70 (6), 583-592, 2010 | 87 | 2010 |
| Armed conflict and population displacement as drivers of the evolution and dispersal of Mycobacterium tuberculosis V Eldholm, JHO Pettersson, OB Brynildsrud, A Kitchen, EM Rasmussen, ... Proceedings of the National Academy of Sciences 113 (48), 13881-13886, 2016 | 81 | 2016 |
| Comment on" population size does not influence mitochondrial genetic diversity in animals" CJ Mulligan, A Kitchen, MM Miyamoto Science 314 (5804), 1390-1390, 2006 | 75 | 2006 |
| DNA analysis of ancient dogs of the Americas: Identifying possible founding haplotypes and reconstructing population histories KE Witt, K Judd, A Kitchen, C Grier, TA Kohler, SG Ortman, BM Kemp, ... Journal of Human Evolution, 2015 | 73 | 2015 |
| Utility of DNA viruses for studying human host history: case study of JC virus A Kitchen, MM Miyamoto, CJ Mulligan Molecular phylogenetics and evolution 46 (2), 673-682, 2008 | 60 | 2008 |
