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Jose Henrique Pereira
Jose Henrique Pereira
Verified email at lbl.gov - Homepage
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Year
Accurate prediction of protein structures and interactions using a three-track neural network
M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ...
Science 373 (6557), 871-876, 2021
33182021
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
SE Boyken, Z Chen, B Groves, RA Langan, G Oberdorfer, A Ford, ...
Science 352 (6286), 680-687, 2016
3542016
Computational design of self-assembling cyclic protein homo-oligomers
JA Fallas, G Ueda, W Sheffler, V Nguyen, DE McNamara, B Sankaran, ...
Nature chemistry 9 (4), 353-360, 2017
1542017
Principles for designing proteins with cavities formed by curved β sheets
E Marcos, B Basanta, TM Chidyausiku, Y Tang, G Oberdorfer, G Liu, ...
Science 355 (6321), 201-206, 2017
1342017
The CCP4 suite: integrative software for macromolecular crystallography
J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ...
Acta Crystallographica Section D: Structural Biology 79 (6), 449-461, 2023
1232023
Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production
RP McAndrew, PP Peralta-Yahya, A DeGiovanni, JH Pereira, MZ Hadi, ...
Structure 19 (12), 1876-1884, 2011
1042011
Exploiting the substrate promiscuity of hydroxycinnamoyl-CoA: shikimate hydroxycinnamoyl transferase to reduce lignin
A Eudes, JH Pereira, S Yogiswara, G Wang, V Teixeira Benites, ...
Plant and Cell Physiology 57 (3), 568-579, 2016
952016
Crystallographic and pre-steady-state kinetics studies on binding of NADH to wild-type and isoniazid-resistant enoyl-ACP (CoA) reductase enzymes from Mycobacterium tuberculosis
JS Oliveira, JH Pereira, F Canduri, NC Rodrigues, ON de Souza, ...
Journal of molecular biology 359 (3), 646-666, 2006
912006
Structure of shikimate kinase from Mycobacterium tuberculosis reveals the binding of shikimic acid
JH Pereira, JS De Oliveira, F Canduri, MV Dias, MS Palma, LA Basso, ...
Acta Crystallographica Section D: Biological Crystallography 60 (12), 2310-2319, 2004
902004
Structural basis for inhibition of human PNP by immucillin-H
WF de Azevedo Jr, F Canduri, DM dos Santos, JH Pereira, MVB Dias, ...
Biochemical and biophysical research communications 309 (4), 917-922, 2003
89*2003
Biochemical characterization and crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima
JH Pereira, Z Chen, RP McAndrew, R Sapra, SR Chhabra, KL Sale, ...
Journal of structural biology 172 (3), 372-379, 2010
842010
Crystal Structures of a Group II Chaperonin Reveal the Open and Closed States Associated with the Protein Folding Cycle*♦
JH Pereira, CY Ralston, NR Douglas, D Meyer, KM Knee, DR Goulet, ...
Journal of biological chemistry 285 (36), 27958-27966, 2010
782010
Nature of wakelike and jetlike axial tip vortex flows
T Lee, J Pereira
Journal of Aircraft 47 (6), 1946-1954, 2010
702010
Structural bioinformatics study of EPSP synthase from Mycobacterium tuberculosis
JH Pereira, F Canduri, JS de Oliveira, NJF da Silveira, LA Basso, ...
Biochemical and biophysical research communications 312 (3), 608-614, 2003
682003
Molecular model of shikimate kinase from Mycobacterium tuberculosis
WF de Azevedo Jr, F Canduri, JS de Oliveira, LA Basso, MS Palma, ...
Biochemical and Biophysical research communications 295 (1), 142-148, 2002
682002
Crystal structure of human purine nucleoside phosphorylase complexed with acyclovir
DM dos Santos, F Canduri, JH Pereira, MVB Dias, RG Silva, MA Mendes, ...
Biochemical and biophysical research communications 308 (3), 553-559, 2003
672003
Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism
MG Thompson, JM Blake-Hedges, P Cruz-Morales, JF Barajas, ...
MBio 10 (3), 10.1128/mbio. 02577-18, 2019
592019
Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase
RP McAndrew, N Sathitsuksanoh, MM Mbughuni, RA Heins, JH Pereira, ...
Proceedings of the National Academy of Sciences 113 (50), 14324-14329, 2016
552016
Biochemical and structural studies of NADH-dependent FabG used to increase the bacterial production of fatty acids under anaerobic conditions
P Javidpour, JH Pereira, EB Goh, RP McAndrew, SM Ma, GD Friedland, ...
Applied and environmental microbiology 80 (2), 497-505, 2014
542014
Structural and biochemical characterization of the early and late enzymes in the lignin β-aryl ether cleavage pathway from Sphingobium sp. SYK-6
JH Pereira, RA Heins, DL Gall, RP McAndrew, K Deng, KC Holland, ...
Journal of Biological Chemistry 291 (19), 10228-10238, 2016
532016
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