Ignacio Arganda-Carreras

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Johannes SchindelinVerified email at wisc.edu
Albert CardonaHHMI JaneliaVerified email at janelia.hhmi.org
Verena KaynigHarvard UniversityVerified email at seas.harvard.edu
Curtis RuedenUniversity of Wisconsin-MadisonVerified email at wisc.edu
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Stephan PreibischHHMI Janelia & BIMSB, MDCVerified email at janelia.hhmi.org
Tobias PietzschCSBD/MPI-CBGVerified email at mpi-cbg.de
Benjamin SchmidOptical Imaging Centre ErlangenVerified email at fau.de
Kevin EliceiriDirector, Laboratory for Optical and Computational Instrumentation, University of Wisconsin at MadisonVerified email at wisc.edu
Mark Longair(Previously) Postdoctoral researcher, Institute of Neuroinformatics, Uni / ETH ZürichVerified email at longair.net
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
Jean-Yves TinevezResearch engineer, Institut Pasteur, Paris, FranceVerified email at pasteur.fr
Daniel James WhiteApplications specialist, GE Healthcare, life sciencesVerified email at ge.com
H Sebastian SeungProfessor, Princeton Neuroscience Institute and Computer Science Dept.Verified email at princeton.edu
Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Philippe AndreyResearch Director (DR2), Institut National de la Recherche Agronomique (INRA)Verified email at inrae.fr
Fadi DornaikaIKERBASQUE Research FoundationVerified email at ehu.es
Carlos Oscar S. SorzanoNational Center of Biotechnology (CSIC)Verified email at cnb.csic.es
David LeglandINRAEVerified email at inrae.fr
Jan KybicFaculty of Electrical Engineering, Czech Technical University in PragueVerified email at fel.cvut.cz

Ignacio Arganda-Carreras

Ikerbasque Associate Researcher at University of the Basque Country and DIPC

Verified email at ehu.eus - Homepage

Machine Learning Image Processing Computer Vision Bioimage Analysis Neuroscience


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Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature Methods 9 (7), 676–682, 2012	27733	2012
BoneJ: free and extensible bone image analysis in ImageJ M Doube, MM Kłosowski, I Arganda-Carreras, FP Cordelières, ... Bone 47 (6), 1076-1079, 2010	1721	2010
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017	911	2017
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012	624	2012
Serial two-photon tomography for automated ex vivo mouse brain imaging T Ragan, LR Kadiri, KU Venkataraju, K Bahlmann, J Sutin, J Taranda, ... Nature methods 9 (3), 255-258, 2012	459	2012
3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy research and technique 73 (11), 1019-1029, 2010	418	2010
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ D Legland, I Arganda-Carreras, P Andrey Bioinformatics 32 (22), 3532-3534, 2016	399	2016
Consistent and elastic registration of histological sections using vector-spline regularization I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ... International Workshop on Computer Vision Approaches to Medical Image …, 2006	285	2006
Crowdsourcing the creation of image segmentation algorithms for connectomics I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ... Frontiers in neuroanatomy 9, 142, 2015	233	2015
Mapping social behavior-induced brain activation at cellular resolution in the mouse Y Kim, KU Venkataraju, K Pradhan, C Mende, J Taranda, SC Turaga, ... Cell reports 10 (2), 292-305, 2015	195	2015
Vision-Based Fall Detection with Convolutional Neural Networks A Núñez-Marcos, G Azkune, I Arganda-Carreras Wireless Communications and Mobile Computing 2017, 1-16, 2017	98	2017
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts A Cardona, S Saalfeld, I Arganda-Carreras, W Pereanu, J Schindelin, ... The Journal of Neuroscience 30 (22), 7538-7553, 2010	61	2010
Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling N Miyasaka, I Arganda-Carreras, N Wakisaka, M Masuda, U Sümbül, ... Nature communications 5 (1), 1-14, 2014	53	2014
A generic classification-based method for segmentation of nuclei in 3D images of early embryos J Gul-Mohammed, I Arganda-Carreras, P Andrey, V Galy, T Boudier BMC bioinformatics 15 (1), 1-12, 2014	36	2014
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy L Abdeladim, KS Matho, S Clavreul, P Mahou, JM Sintes, X Solinas, ... Nature communications 10 (1), 1-14, 2019	33	2019
NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei A Poulet, I Arganda-Carreras, D Legland, AV Probst, P Andrey, C Tatout Bioinformatics 31 (7), 1144-1146, 2015	31	2015
Phenotyping nematode feeding sites: three‐dimensional reconstruction and volumetric measurements of giant cells induced by root‐knot nematodes in Arabidopsis J Cabrera, FE Díaz‐Manzano, M Barcala, I Arganda‐Carreras, ... New Phytologist 206 (2), 868-880, 2015	29	2015
Deep learning on chest x-ray images to detect and evaluate pneumonia cases at the era of covid-19 K Hammoudi, H Benhabiles, M Melkemi, F Dornaika, I Arganda-Carreras, ... arXiv preprint arXiv:2004.03399, 2020	22	2020
Trainable Weka segmentation: a machine learning tool for microscopy image segmentation I Arganda-Carreras, V Kaynig, J Schindelin, A Cardona, HS Seung Neuroscience 2014, 73-80, 2014	22	2014
An optimized approach to perform bone histomorphometry D Malhan, M Muelke, S Rosch, AB Schaefer, F Merboth, D Weisweiler, ... Frontiers in endocrinology 9, 666, 2018	20	2018

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