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Zhiping Weng
Zhiping Weng
Prof & Chair, Department of Genomics and Computational Biology, UMASS Medical School
Verified email at umassmed.edu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
140192012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
60292007
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
ND Heintzman, RK Stuart, G Hon, Y Fu, CW Ching, RD Hawkins, ...
Nature genetics 39 (3), 311-318, 2007
39402007
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ...
Science 306 (5696), 636-640, 2004
23772004
The TREM2-APOE pathway drives the transcriptional phenotype of dysfunctional microglia in neurodegenerative diseases
S Krasemann, C Madore, R Cialic, C Baufeld, N Calcagno, R El Fatimy, ...
Immunity 47 (3), 566-581. e9, 2017
20522017
High-resolution mapping and characterization of open chromatin across the genome
AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, ...
Cell 132 (2), 311-322, 2008
17232008
ZDOCK: an initial‐stage protein‐docking algorithm
R Chen, L Li, Z Weng
Proteins: Structure, Function, and Bioinformatics 52 (1), 80-87, 2003
16402003
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
15912005
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers
BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng
Bioinformatics 30 (12), 1771-1773, 2014
15622014
A global map of p53 transcription-factor binding sites in the human genome
CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, ...
Cell 124 (1), 207-219, 2006
14482006
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals
BR Carone, L Fauquier, N Habib, JM Shea, CE Hart, R Li, C Bock, C Li, ...
Cell 143 (7), 1084-1096, 2010
12632010
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
12342020
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
10542012
Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo
H Yin, CQ Song, JR Dorkin, LJ Zhu, Y Li, Q Wu, A Park, J Yang, S Suresh, ...
Nature biotechnology 34 (3), 328-333, 2016
9482016
Defining functional DNA elements in the human genome
M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ...
Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014
8762014
Comprehensive functional genomic resource and integrative model for the human brain
D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ...
Science 362 (6420), eaat8464, 2018
8252018
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
M Ghildiyal, H Seitz, MD Horwich, C Li, T Du, S Lee, J Xu, ELW Kittler, ...
Science 320 (5879), 1077-1081, 2008
8032008
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
MM Hoffman, OJ Buske, J Wang, Z Weng, JA Bilmes, WS Noble
Nature methods 9 (5), 473-476, 2012
7222012
Target RNA–directed trimming and tailing of small silencing RNAs
SL Ameres, MD Horwich, JH Hung, J Xu, M Ghildiyal, Z Weng, PD Zamore
Science 328 (5985), 1534-1539, 2010
7002010
Unexpected role of interferon-γ in regulating neuronal connectivity and social behaviour
AJ Filiano, Y Xu, NJ Tustison, RL Marsh, W Baker, I Smirnov, CC Overall, ...
Nature 535 (7612), 425-429, 2016
6582016
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