Stephen S Fong
Title
Cited by
Cited by
Year
In silico design and adaptive evolution of Escherichia coli for production of lactic acid
SS Fong, AP Burgard, CD Herring, EM Knight, FR Blattner, CD Maranas, ...
Biotechnology and bioengineering 91 (5), 643-648, 2005
4372005
Systems approach to refining genome annotation
JL Reed, TR Patel, KH Chen, AR Joyce, MK Applebee, CD Herring, ...
Proceedings of the National Academy of Sciences 103 (46), 17480-17484, 2006
3622006
Metabolic gene–deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes
SS Fong, BØ Palsson
Nature genetics 36 (10), 1056-1058, 2004
3622004
Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications
G Wu, Q Yan, JA Jones, YJ Tang, SS Fong, MAG Koffas
Trends in biotechnology 34 (8), 652-664, 2016
3602016
Comparison of chondrogensis in static and perfused bioreactor culture
D Pazzano, KA Mercier, JM Moran, SS Fong, DD DiBiasio, JX Rulfs, ...
Biotechnology progress 16 (5), 893-896, 2000
3402000
Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
SS Fong, AR Joyce, BØ Palsson
Genome research 15 (10), 1365-1372, 2005
3252005
The vaginal microbiome and preterm birth
JM Fettweis, MG Serrano, JP Brooks, DJ Edwards, PH Girerd, HI Parikh, ...
Nature medicine 25 (6), 1012-1021, 2019
3112019
Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes
SS Fong, A Nanchen, BO Palsson, U Sauer
Journal of Biological Chemistry 281 (12), 8024-8033, 2006
2202006
Description and Interpretation of Adaptive Evolution of Escherichia coli K-12 MG1655 by Using a Genome-Scale In Silico Metabolic Model
SS Fong, JY Marciniak, BØ Palsson
Journal of bacteriology 185 (21), 6400-6408, 2003
1512003
Identification of genome-scale metabolic network models using experimentally measured flux profiles
MJ Herrgård, SS Fong, BØ Palsson
PLoS computational biology 2 (7), e72, 2006
1422006
Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production
SB Roberts, CM Gowen, JP Brooks, SS Fong
BMC systems biology 4 (1), 1-17, 2010
1362010
Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy
MG Serrano, HI Parikh, JP Brooks, DJ Edwards, TJ Arodz, L Edupuganti, ...
Nature medicine 25 (6), 1001-1011, 2019
1052019
Engineering microbial consortia by division of labor
GW Roell, J Zha, RR Carr, MA Koffas, SS Fong, YJ Tang
Microbial cell factories 18 (1), 1-11, 2019
952019
Metabolic engineering of Thermobifida fusca for direct aerobic bioconversion of untreated lignocellulosic biomass to 1-propanol
Y Deng, SS Fong
Metabolic engineering 13 (5), 570-577, 2011
792011
Metabolic analysis of adaptive evolution for in silico‐designed lactate‐producing strains
Q Hua, AR Joyce, SS Fong, BØ Palsson
Biotechnology and bioengineering 95 (5), 992-1002, 2006
772006
Metabolic Characterization of Escherichia coli Strains Adapted to Growth on Lactate
Q Hua, AR Joyce, BØ Palsson, SS Fong
Applied and environmental microbiology 73 (14), 4639-4647, 2007
672007
Lignin biodegradation and industrial implications
AB Fisher, SS Fong
Aims Bioengineering 1 (2), 92-112, 2014
652014
Genome‐scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum
CM Gowen, SS Fong
Biotechnology journal 5 (7), 759-767, 2010
592010
Do genome‐scale models need exact solvers or clearer standards?
A Ebrahim, E Almaas, E Bauer, A Bordbar, AP Burgard, RL Chang, ...
Molecular systems biology 11 (10), 831, 2015
522015
Challenges and Advances for Genetic Engineering of Non-model Bacteria and Uses in Consolidated Bioprocessing
Q Yan, SS Fong
FRONTIERS IN MICROBIOLOGY 8, 2017
512017
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Articles 1–20