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Markus Herrgard
Markus Herrgard
CTO, BioInnovation Institute
Verified email at novo.dk - Homepage
Title
Cited by
Cited by
Year
Reconstruction of biochemical networks in microorganisms
AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson
Nature Reviews Microbiology 7 (2), 129-143, 2009
10182009
Integrating high-throughput and computational data elucidates bacterial networks
MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
Nature 429 (6987), 92-96, 2004
9852004
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard
Nature protocols 2 (3), 727-738, 2007
9752007
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
NC Duarte, MJ Herrgård, BØ Palsson
Genome research 14 (7), 1298-1309, 2004
8072004
Network-based prediction of human tissue-specific metabolism
T Shlomi, MN Cabili, MJ Herrgård, BØ Palsson, E Ruppin
Nature biotechnology 26 (9), 1003-1010, 2008
6912008
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ...
Nature biotechnology 26 (10), 1155-1160, 2008
6552008
Connecting extracellular metabolomic measurements to intracellular flux states in yeast
ML Mo, BØ Palsson, MJ Herrgård
BMC systems biology 3 (1), 1-17, 2009
4942009
Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae
T Jakočiūnas, I Bonde, M Herrgård, SJ Harrison, M Kristensen, ...
Metabolic engineering 28, 213-222, 2015
3782015
Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism
D Machado, M Herrgård
PLoS computational biology 10 (4), e1003580, 2014
3642014
Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
MJ Herrgård, BS Lee, V Portnoy, BØ Palsson
Genome research 16 (5), 627-635, 2006
2782006
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ...
Metabolic engineering 12 (3), 173-186, 2010
2602010
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function
WP Inskeep, DB Rusch, ZJ Jay, MJ Herrgard, MA Kozubal, ...
PloS one 5 (3), e9773, 2010
2032010
Reconstruction of microbial transcriptional regulatory networks
MJ Herrgård, MW Covert, BØ Palsson
Current opinion in biotechnology 15 (1), 70-77, 2004
1912004
Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine
I Borodina, KR Kildegaard, NB Jensen, TH Blicher, J Maury, S Sherstyk, ...
Metabolic engineering 27, 57-64, 2015
1652015
Methods and systems to identify operational reaction pathways
BO Palsson, MW Covert, M Herrgard
US Patent 7,734,420, 2010
1612010
Reconciling gene expression data with known genome-scale regulatory network structures
MJ Herrgård, MW Covert
Genome research 13 (11), 2423-2434, 2003
1582003
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
1552020
Identification of genome-scale metabolic network models using experimentally measured flux profiles
MJ Herrgård, SS Fong, BØ Palsson
PLoS computational biology 2 (7), e72, 2006
1482006
Building a global alliance of biofoundries
N Hillson, M Caddick, Y Cai, JA Carrasco, MW Chang, NC Curach, ...
Nature communications 10 (1), 1-4, 2019
1432019
The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem
WP Inskeep, ZJ Jay, SG Tringe, M Herrgard, DB Rusch
Frontiers in microbiology 4, 67, 2013
1422013
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Articles 1–20